Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02152 ATGGGATACGATGCGTATGCGTTTGGGGAAGTGGGAGAAGAAGATATGATTGAGGAGCTGCTGGTAGAAGGTTGCTGGGTGGAAAGGAGTGGGAAGAGATGGTGGATTAATCCGAATCCTGGGTCGGTGAAAGAGAGAGTGGTGGTTGCGGTGGGGTACCTGAGAGAATACAGGAAGAACGGGAATGAGGTGATGCAGATATGGGTTCCGGAAAggggagggggagggggagggggaggggTTGGGCCAGGGCCAGATGAGTCGGTCTGGGGTGGTTATCCGatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaacatgaTGAACCGAAGCATAAGGGTTGGGTTTTTGAGATGGGAGGAAGGGGTTCCTTATGGTTATGAAGAGGGCCCAGGATGGATGGGCCTTCCGGTGTTGGAAAGAGGGAGTGGGAAGTGTCTGGGAGTGCTCCACATTGAGTATGAGTATGAAGGTGGTGTGGAGGGAGCAGTGAATGAGGTGGTGGAGGTGTTGACGTGTGTGTGCAAGGCGCAGAATCTGCCTTTGGCACTCACATGGGCTCCTTGCACCCAAGCCAAGTGCGGCTACGGCCACTCCCACTCCAATTACGTCTCCACTGTCGACAGAGCGTGTTTCGTCGGAGATGCGCACTTGTTGCCCTTCCATGAGGTCTGCTCCGACCATCACCTTTTGCGGGGACAGGGAATCGTTGGAACGGCCTTCACCACTGCCAAGCCCTGTTTCGCCACTGACATCACCGCCTTCACCAACGATGAATACCCTTTGGCTCACCATGCCTCCGTGCTGGGCCTCCACGCTGCCGTCGCTATTCCTCTGCGGAGCGTCTCCACGGACTTTGTGGTGGAGTTGTTCCTTCCCAAGGACTGCCTCCTGAGGGAGCACCAGAACCACTTGCTCAACTCCTTGTCCCTCCTCCTTCAGCAAGCTTGCCGGAGCCTCCATGTTGTGACGGAGGATGAGTTGTCGTTCCCATTCCCGCAGGTTGTAGAAGAACAGTCGTGGATCGCGAACATGATGGAGGCCCAGGCCCAGAAGGGGAAAGGTGTGTGCGTGTCTTTGGAATACCTTGAACTGGAAGAGCCCATGGAGGAGTTCAAAGTGACAAGCAACTGCAACTGGGACAAGACTCCCAGTTATGTAGAGGAGCAGCAGGTGTTTTCTGATTTTATTGCACAAGACTCCCAAACTCACACTCACACCTTCAGTGCCCGCCGTGGCAGAAAGTCCGGTGAGAAGAGACGAACCAAGGCGGAGAAGACTATCAGCTTGCCAGTTCTAAGACAGTACTTCGCAGGAAGCCTGAAAGATGCGGCAAAGAGCATTGGCGTGTGTCCCACAACTCTGAAAAGAATATGCAGACAGCATGGCATAACGAGGTGGCCTTCGAGGAAAATAAAGAAGGTAGGGCACTCTTTGAAGAAGCTTCAGCTTGTGATTGATTCGGTGCAGGGTGCGGAGGGTTCCATACAGATCGGCTCCTTCTATTCCAGTTTTCCAGAGTTGAGCTCTGCTGCTCCTTGTGAGTCGAAAAACAAGAATATTAATAACTCGTTGCATGGGCATGCAGAAAGCCCTGTTGGCGTTGCAGTTGCATTGAGAGTGAAGGCGACTTTTGCGGATGAGAAAATCCGATTCAGCTTGCAACAGGTGTGGGGGTTCGCAGAGTTGCAGGTGGAGATAGCAAGGCGTTTCAATCTAAACGAGATGAGGAGTGTGGTTCTAAAGTATTTGGATGATGAAGGGGAGTGGGTGGTCTTAGCTTGCGATGCTGATCTTGAGGAGTGTAAAGACTTGCATACAGCGTCTCACAACCGCACAATTAGACTCGCCCTATTTCAAGCTTCACCTCCCAATACTTTCCCCTATCCTAGCCCTTCAACCTAG 1941 0.4977 MGYDAYAFGEVGEEDMIEELLVEGCWVERSGKRWWINPNPGSVKERVVVAVGYLREYRKNGNEVMQIWVPERGGGGGGGGVGPGPDESVWGGYPMNMNMNMNMNMNMNMNMNMNMNMNMMNRSIRVGFLRWEEGVPYGYEEGPGWMGLPVLERGSGKCLGVLHIEYEYEGGVEGAVNEVVEVLTCVCKAQNLPLALTWAPCTQAKCGYGHSHSNYVSTVDRACFVGDAHLLPFHEVCSDHHLLRGQGIVGTAFTTAKPCFATDITAFTNDEYPLAHHASVLGLHAAVAIPLRSVSTDFVVELFLPKDCLLREHQNHLLNSLSLLLQQACRSLHVVTEDELSFPFPQVVEEQSWIANMMEAQAQKGKGVCVSLEYLELEEPMEEFKVTSNCNWDKTPSYVEEQQVFSDFIAQDSQTHTHTFSARRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGSIQIGSFYSSFPELSSAAPCESKNKNINNSLHGHAESPVGVAVALRVKATFADEKIRFSLQQVWGFAELQVEIARRFNLNEMRSVVLKYLDDEGEWVVLACDADLEECKDLHTASHNRTIRLALFQASPPNTFPYPSPST 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02152 646 ProSiteProfiles RWP-RK domain profile. 426 507 IPR003035 -
Cca05g02152 646 ProSiteProfiles PB1 domain profile. 550 633 IPR000270 GO:0005515
Cca05g02152 646 CDD PB1_NLP 551 632 IPR034891 -
Cca05g02152 646 Pfam PB1 domain 551 632 IPR000270 GO:0005515
Cca05g02152 646 SUPERFAMILY CAD & PB1 domains 550 636 - -
Cca05g02152 646 PANTHER PROTEIN NLP2 30 641 - -
Cca05g02152 646 SMART PB1_new 550 633 IPR000270 GO:0005515
Cca05g02152 646 Pfam RWP-RK domain 440 487 IPR003035 -
Cca05g02152 646 MobiDBLite consensus disorder prediction 416 436 - -
Cca05g02152 646 Gene3D - 548 636 - -
Cca05g02152 646 PANTHER PROTEIN NLP8 30 641 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02152 Cca-Chr5 41196087 41198510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02152 32 627 NLP Transcription Factor Family AT1G76350 35.515 7.53e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca05g02152 PB1 6.7e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02152 - - var:108322742 684.1