Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02151 ATGAACGCAGAAGCAACTTGTTCGTCTTCTTGTTTATTTGTGGGGAAGAAGCGTAGCAGAATGGGGGATGATGCGTGGAAGGGGAAGAGATCAGAGGCGGAGGGTGAGCCTCGTCCGTGCACGGAATGCGGGAAGAAGTTCTGGTCATGGAAGGCTCTCTTCGGGCACATGCGATGCCACCCTGAGAGGCAGTGGAGAGGGATCAATCCTCCTCCGAATCTGAATCTGATGAGAGCACAACAGCAGCCGCGTGatgagcaggtgagcgtgagcatgagcatgagcatgaCACAGGAAGACCACGAGGTGGCTGCATGTTTGCTTCTTCTtgcaaatgcaaatgcaaatgcaaatgcaaatgcaaatgcaaatgcaaatgcaaatgcaaatgcGTCTTGTTCTGATCAGTTCGAGTGCTCCAGTTGCAACAAGGTGTTCGGGTCCCACCAGGCTCTGGGAGGGCACCGCGCGAGTCACAAGAACGTGAAGGGGTGTTTCGCCAACAGTGAGGAGAACAACAATGGACACAAGTGCAGCATATGCCAGAGGGTCTTCTCCACTGGGCAGGCTCTTGGAGGCCACAAGCGGTGTCATTGGGACAAACCCTTTCACTCTCTCGACTTGAATCTCcctcccccttcctcctcctcctcctctcctcccctcactcTTGATTTGACTTTGGGACTTTAA 693 0.43 MNAEATCSSSCLFVGKKRSRMGDDAWKGKRSEAEGEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLNLMRAQQQPRDEQVSVSMSMSMTQEDHEVAACLLLLANANANANANANANANANANASCSDQFECSSCNKVFGSHQALGGHRASHKNVKGCFANSEENNNGHKCSICQRVFSTGQALGGHKRCHWDKPFHSLDLNLPPPSSSSSSPPLTLDLTLGL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02151 230 MobiDBLite consensus disorder prediction 210 224 - -
Cca05g02151 230 SUPERFAMILY beta-beta-alpha zinc fingers 37 159 IPR036236 -
Cca05g02151 230 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Cca05g02151 230 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Cca05g02151 230 SMART c2h2final6 176 198 IPR013087 -
Cca05g02151 230 SMART c2h2final6 137 159 IPR013087 -
Cca05g02151 230 SMART c2h2final6 38 60 IPR013087 -
Cca05g02151 230 Pfam C2H2-type zinc finger 137 160 - -
Cca05g02151 230 Pfam C2H2-type zinc finger 39 62 - -
Cca05g02151 230 Pfam C2H2-type zinc finger 176 201 - -
Cca05g02151 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Cca05g02151 230 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 226 - -
Cca05g02151 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Cca05g02151 230 MobiDBLite consensus disorder prediction 210 230 - -
Cca05g02151 230 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Cca05g02151 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Cca05g02151 230 SUPERFAMILY beta-beta-alpha zinc fingers 173 201 IPR036236 -
Cca05g02151 230 Gene3D Classic Zinc Finger 135 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02151 Cca-Chr5 41163474 41164190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02151 38 230 C2H2 Transcription Factor Family AT4G35280 51.802 1.09e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g02151 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02151 - - gmx:100792631 230.72