Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02142 ATGGAAAAGAGAGGTGACAGTGCTGATGCTGAGCTTCAACTTGATGCTGTTTTTGAGCCCGATCCTGCCCAGATATGTTCTGTAAATGAAAATGGTGATAAGGCCTTCTCGATTCTCCAGTCCAGGCGACCTAATCTATCCTCACTTCAAATACCAACATGGTCACTAGATATTGCATTTTCTTCTTTTGCAAGAACTGATGGTCCTTCAGTTTCACTGTCAAGTCCTGGTTACATAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGCCAGGTCTTCAATGAGAAATTTACTACCTCAGAGGAGCTTAAAGACAAATACTCGTTCCCAGGGCATTGAAAAGACAGGTCTCATAGTTCCTAACACTCCCCCATCGGATGCTCCTTTGGATAAACCTTCCGCTTCAACCCATCTGTCTCTTAATAATAAGGACATCTCCCCATCAACAAAAGTTGCACATTCATTACCAGTCACTCCATTTGCAACTTCAGCTGCAGAGAATGTACATGGAAGACCTCCGGGGTTTAGTTCTGGTTTTAGTACATCAGAAGTTCATCAACATATGACTCGATCATTTTCAGTCCCAGTTAAAGGAAAAACCACTAAAAGGACAGATTCCGGGGGCTTGATTCGTGTAATTTCAGCAAAACCGCATCTCGAAACTGTTGGTGGAATCTCAACTGATGGTACTTTGGTTCCAGAGATTGCCATTGAAGATGTGACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGTTGGAGCTTGGGGAAGGAGGAAATACACTTAAGATGGAATGTAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATCAAGGGAAACAGGACCTGTGATGTCTGCAAGAAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTCATACTCCTGAAACTACATCTAGGCAGGAATCAAATGTGTCACGACCGACAGAAGTAGCTTATCACAGGATCTGGCGGGAGGTACCGGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGTTTATCAGGTTTCAGATTTGGGCCCTCGAGCTCTTGCCATTTCATTACCTTTCTCCTTTTCCTTAG 1146 0.4311 MEKRGDSADAELQLDAVFEPDPAQICSVNENGDKAFSILQSRRPNLSSLQIPTWSLDIAFSSFARTDGPSVSLSSPGYIRGLPPRPNSAKARSSMRNLLPQRSLKTNTRSQGIEKTGLIVPNTPPSDAPLDKPSASTHLSLNNKDISPSTKVAHSLPVTPFATSAAENVHGRPPGFSSGFSTSEVHQHMTRSFSVPVKGKTTKRTDSGGLIRVISAKPHLETVGGISTDGTLVPEIAIEDVTEDIPEEQAVCRICLLELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKKDVQNLPVTLLKIHTPETTSRQESNVSRPTEVAYHRIWREVPVLILVSMLSYFCFLEQLLFIRFQIWALELLPFHYLSPFP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02142 381 MobiDBLite consensus disorder prediction 90 117 - -
Cca05g02142 381 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Cca05g02142 381 PANTHER OS02G0165000 PROTEIN 25 373 - -
Cca05g02142 381 CDD RING_CH-C4HC3_MARCH 252 300 - -
Cca05g02142 381 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Cca05g02142 381 SMART ringv_2 251 300 IPR011016 GO:0008270
Cca05g02142 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 307 IPR013083 -
Cca05g02142 381 PANTHER OS02G0165000 PROTEIN 25 373 - -
Cca05g02142 381 SUPERFAMILY RING/U-box 248 302 - -
Cca05g02142 381 MobiDBLite consensus disorder prediction 75 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02142 Cca-Chr5 41071316 41076750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02142 252 306 C3H Transcription Factor Family AT2G37950 48.214 1.98e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02142 - - gmx:100789461 573.548