Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02134 ATGGTGGCATGTTGGACATCCCTTCTGGCTTCTGGAATATACGAAGAAGGGGTTGGTGGGAATaaagaagaagataaaaagaatcagaatagtgaagctgagaaagagatggagaTGCAACAGCTCCTCAGCATGGGCTTTCCGGACGAGTTAGCCGCCCAAGCGCTGGCTGCCACAGGCGGAAAATCGACAGTCAAAGCCACCGAATGGATTCTCACTCACAAGCCTAACTCCTCAAACCCTTCCACTTCCACTTCCGCAACCACACTCCAGCCCAAGCTCGATCGTTTcttccattcccaatcccccacccctccacactcccaAGAACAAGAACAGCCCTCCAAACGCCTCAAGCCTTCTCAAAAACAACAAAACTGGCCCTCCTTCTTCTTCAAGAAACAAGGCAACACGCACATTCACGAGCCCTTGTACGAGCGTTTGCGTCCCAGAACCCTAGACGAGGTGGTCGCCCAGGAGCATCTCCTCTCCCCCAACTCCCTTCTCCGCTCCGCAATCCAACGCAATCGCCTCCCTTCCCTCCTCTTCTGGGGTCCACCTGGCACCGGCAAGACCACTATCGCCAGAGCCATCGTCAACTCCGCCACCTCAACCTGTTACCGTTTTGTCTCCCTATCCGCCGTCACCAGCGGCGTTAAAGACGTCAGGGACGCCGTCGACGAAGCCAGAAAACTCAGGCTCAAATCTAACCAAACCACCGTTCTCTTCGTCGACGAGGTTCACAGGTTCAACAAGTCTCAACAGGACTCTTTCCTACCCGTCATTGAAGATGGCAGCATTGTCTTCGTTGGCGCCACCACCGAGAACCCTTCTTTCCATTTGATTACGCCTCTCTTGTCTCGATGCCGTGTCCTCACTCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGTGCCGTGAATAACCCTGACAAAGGCTTGCTGCAAAGCGTGGGGCTTCAGGTTCATGTGGGTGAAGATGTTGTTGATTTTATAAGCAACAATTGTGATGGGGATGCTCGTGTGGCCTTGAATTCCTTGGAGATTGCATCTGTTACCGCAGCTGCACGGCTACAACATGGTAAGCAAAAGGAGGAGGAAGGGATTGAAAATCAGACAAAAGAGGAATACAATGTTGCTGTTGTTAGTGTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCATTATAATCTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGCGATGCAGATGCAGCTATTTACTGGTTGGCAAGAATGCTACAGGGTGGTGAAGAGCCTCTTTACATTGCACGGAGACTCGTACGGTTTGCAAGTGAGGATGTTGGTCTGGCTGATCCATCGGCTCTTACTCAGGCCGTTTCCTGCTACCAAGCTTGCCACTTCCTGGGAATGCCCGAATGCAATGTCATTCTTGCGCAGTGTGTAGCTTACTTGGCCTTGGCACCTAAATCTGTTGCAGTTTATCGAGCAATAGAAGCTGCTCAGAAGGCAGTGAGAGAATCGGCGGGACACAATGAGGGGGTCCCTCTCCATTTGAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGGTATATCTACCCTCCTGACAACCCCTTTTCCACACAAACGTACATGCCACCATCACTTCAAGGCCACAAGTTCCTCCATTGGCCCGACAGAATTCCATCTGACGGATAA 1737 0.4865 MVACWTSLLASGIYEEGVGGNKEEDKKNQNSEAEKEMEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSSNPSTSTSATTLQPKLDRFFHSQSPTPPHSQEQEQPSKRLKPSQKQQNWPSFFFKKQGNTHIHEPLYERLRPRTLDEVVAQEHLLSPNSLLRSAIQRNRLPSLLFWGPPGTGKTTIARAIVNSATSTCYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNNPDKGLLQSVGLQVHVGEDVVDFISNNCDGDARVALNSLEIASVTAAARLQHGKQKEEEGIENQTKEEYNVAVVSVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLQGGEEPLYIARRLVRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRAIEAAQKAVRESAGHNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPFSTQTYMPPSLQGHKFLHWPDRIPSDG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02134 578 Pfam UBA/TS-N domain 39 71 IPR015940 -
Cca05g02134 578 SMART AAA_5 177 297 IPR003593 -
Cca05g02134 578 CDD HLD_clamp_RarA 297 395 - -
Cca05g02134 578 MobiDBLite consensus disorder prediction 97 124 - -
Cca05g02134 578 Gene3D - 132 295 IPR027417 -
Cca05g02134 578 PRINTS CbxX/CfqX superfamily signature 180 195 IPR000641 GO:0005524
Cca05g02134 578 PRINTS CbxX/CfqX superfamily signature 229 248 IPR000641 GO:0005524
Cca05g02134 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 365 IPR027417 -
Cca05g02134 578 SUPERFAMILY post-AAA+ oligomerization domain-like 405 572 IPR008921 GO:0003677|GO:0006260
Cca05g02134 578 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 32 74 IPR015940 -
Cca05g02134 578 SMART uba_6 35 73 IPR015940 -
Cca05g02134 578 SUPERFAMILY UBA-like 35 77 IPR009060 GO:0005515
Cca05g02134 578 Gene3D - 28 87 - -
Cca05g02134 578 Gene3D - 395 498 - -
Cca05g02134 578 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 51 573 - -
Cca05g02134 578 Coils Coil 21 43 - -
Cca05g02134 578 MobiDBLite consensus disorder prediction 17 38 - -
Cca05g02134 578 Pfam AAA C-terminal domain 324 420 IPR032423 -
Cca05g02134 578 Gene3D - 297 374 - -
Cca05g02134 578 MobiDBLite consensus disorder prediction 97 111 - -
Cca05g02134 578 CDD AAA 157 290 - -
Cca05g02134 578 MobiDBLite consensus disorder prediction 18 34 - -
Cca05g02134 578 Gene3D - 499 574 - -
Cca05g02134 578 Pfam MgsA AAA+ ATPase C terminal 421 569 IPR021886 -
Cca05g02134 578 Pfam ATPase family associated with various cellular activities (AAA) 181 291 IPR003959 GO:0005524|GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02134 143 421 Core DNA Replication Machinery Family AT1G77470 26.667 1.91e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02134 K07478 - gmx:100799257 870.537