LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g02134	ATGGTGGCATGTTGGACATCCCTTCTGGCTTCTGGAATATACGAAGAAGGGGTTGGTGGGAATaaagaagaagataaaaagaatcagaatagtgaagctgagaaagagatggagaTGCAACAGCTCCTCAGCATGGGCTTTCCGGACGAGTTAGCCGCCCAAGCGCTGGCTGCCACAGGCGGAAAATCGACAGTCAAAGCCACCGAATGGATTCTCACTCACAAGCCTAACTCCTCAAACCCTTCCACTTCCACTTCCGCAACCACACTCCAGCCCAAGCTCGATCGTTTcttccattcccaatcccccacccctccacactcccaAGAACAAGAACAGCCCTCCAAACGCCTCAAGCCTTCTCAAAAACAACAAAACTGGCCCTCCTTCTTCTTCAAGAAACAAGGCAACACGCACATTCACGAGCCCTTGTACGAGCGTTTGCGTCCCAGAACCCTAGACGAGGTGGTCGCCCAGGAGCATCTCCTCTCCCCCAACTCCCTTCTCCGCTCCGCAATCCAACGCAATCGCCTCCCTTCCCTCCTCTTCTGGGGTCCACCTGGCACCGGCAAGACCACTATCGCCAGAGCCATCGTCAACTCCGCCACCTCAACCTGTTACCGTTTTGTCTCCCTATCCGCCGTCACCAGCGGCGTTAAAGACGTCAGGGACGCCGTCGACGAAGCCAGAAAACTCAGGCTCAAATCTAACCAAACCACCGTTCTCTTCGTCGACGAGGTTCACAGGTTCAACAAGTCTCAACAGGACTCTTTCCTACCCGTCATTGAAGATGGCAGCATTGTCTTCGTTGGCGCCACCACCGAGAACCCTTCTTTCCATTTGATTACGCCTCTCTTGTCTCGATGCCGTGTCCTCACTCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGTGCCGTGAATAACCCTGACAAAGGCTTGCTGCAAAGCGTGGGGCTTCAGGTTCATGTGGGTGAAGATGTTGTTGATTTTATAAGCAACAATTGTGATGGGGATGCTCGTGTGGCCTTGAATTCCTTGGAGATTGCATCTGTTACCGCAGCTGCACGGCTACAACATGGTAAGCAAAAGGAGGAGGAAGGGATTGAAAATCAGACAAAAGAGGAATACAATGTTGCTGTTGTTAGTGTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCATTATAATCTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGCGATGCAGATGCAGCTATTTACTGGTTGGCAAGAATGCTACAGGGTGGTGAAGAGCCTCTTTACATTGCACGGAGACTCGTACGGTTTGCAAGTGAGGATGTTGGTCTGGCTGATCCATCGGCTCTTACTCAGGCCGTTTCCTGCTACCAAGCTTGCCACTTCCTGGGAATGCCCGAATGCAATGTCATTCTTGCGCAGTGTGTAGCTTACTTGGCCTTGGCACCTAAATCTGTTGCAGTTTATCGAGCAATAGAAGCTGCTCAGAAGGCAGTGAGAGAATCGGCGGGACACAATGAGGGGGTCCCTCTCCATTTGAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGGTATATCTACCCTCCTGACAACCCCTTTTCCACACAAACGTACATGCCACCATCACTTCAAGGCCACAAGTTCCTCCATTGGCCCGACAGAATTCCATCTGACGGATAA	1737	0.4865	MVACWTSLLASGIYEEGVGGNKEEDKKNQNSEAEKEMEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSSNPSTSTSATTLQPKLDRFFHSQSPTPPHSQEQEQPSKRLKPSQKQQNWPSFFFKKQGNTHIHEPLYERLRPRTLDEVVAQEHLLSPNSLLRSAIQRNRLPSLLFWGPPGTGKTTIARAIVNSATSTCYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNNPDKGLLQSVGLQVHVGEDVVDFISNNCDGDARVALNSLEIASVTAAARLQHGKQKEEEGIENQTKEEYNVAVVSVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLQGGEEPLYIARRLVRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRAIEAAQKAVRESAGHNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPFSTQTYMPPSLQGHKFLHWPDRIPSDG	578

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g02134	578	Pfam	UBA/TS-N domain	39	71	IPR015940	-
	Cca05g02134	578	SMART	AAA_5	177	297	IPR003593	-
	Cca05g02134	578	CDD	HLD_clamp_RarA	297	395	-	-
	Cca05g02134	578	MobiDBLite	consensus disorder prediction	97	124	-	-
	Cca05g02134	578	Gene3D	-	132	295	IPR027417	-
	Cca05g02134	578	PRINTS	CbxX/CfqX superfamily signature	180	195	IPR000641	GO:0005524
	Cca05g02134	578	PRINTS	CbxX/CfqX superfamily signature	229	248	IPR000641	GO:0005524
	Cca05g02134	578	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	365	IPR027417	-
	Cca05g02134	578	SUPERFAMILY	post-AAA+ oligomerization domain-like	405	572	IPR008921	GO:0003677\|GO:0006260
	Cca05g02134	578	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	32	74	IPR015940	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g02134	143	421	Core DNA Replication Machinery Family	AT1G77470	26.667	1.91e-12	67.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g02134	K07478		-	gmx:100799257	870.537

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