Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02129 ATGGGGACCATTATTCCACAAATTGGCAGCCAAAGTGTTTCCTCTGAGTCGAAGTGGTTGTCTGTGAGTGACACAGATCCGCTGAACTGGGGTGAGGCAGCGGATTCACTCAAAGGTAGCCACCTTGACGAAGTAAAACGCATGGTGGCAGAGTACCGCAAGCCAGTGATCTGTGTGGGTGGGGGAGAAACACTAACTATATCACAGGTGGCTGCTGTTGCCAACCATAACTTGCAGGCTAAGGTTGACCTTTCAGAGTCTGCAAGGGCAGGCGTCGACGCCAGCTGCGAGTGGATCATAGAAAACATTAAAAAAGGGACTGCCATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCCCACAGGCGAACTGAACAAGGCCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAACTGCGCAATATTTGGCTACGAAACAGAGTTATCTCATACACTGCCTAAATCAGCAACCAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAGGGGTACTCAGGAATTAGATTTGAAATCTTACAAGCTATCACCAAACTCCTCAACCACAATGTCACCCCCATCTTGCCATTACGTGGTACAATTACTGCGTCTGGTGATCTAATTCCTCTGTCCTACATTGCTGCATTGCTAACCGGTAGGCGAAACAGTAAAGCTGTCGGACCATCTGGAGAGTCCCTTAATGCTAAGGAAGCTTTCCATTTAGCAGGTCTACATTCTGGCTTCTTTGAGTTGAAGCCAAAGGAAGGTGTTGCCCTCGTAAACGGCACAGCCGTTGGGTCTGGTGTAGCTTCTGTGGTGCTTTTTGAGGCAAACATATTAGCTTTACTGTCGGAAGTTTTATCAGCAGTTTTTGCTGAAGTTATGCAGGGGAAGCCAGAATTTACTCATCATCTTATACATAAGCTGAAGTACCATCCTGGCCAAATTGAAGCTGCCGCTATTATGGAACACATTTTAGATGGAAGCTCGTATGTCAAAAATGCTAAAGTGCAACAGGCAGATCCGTTGCAGAAGCCTAGAAAGGATCGTTATGCTCTTGTAACATCTCCTCAGTGGCTTGGTCCACAGATTGAAATCATCCGCTATTCAACCAAATCAATTGAAAGGGAGATAAACTCAGTAAATGACAACCCCTTGATTGATGTCACAAGGAATAAGGCTTTGAATGGTGGTAATTTCCAAGGCACTCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTGGCTTCAATTGGCAAGCTCATCTTTGCCCAATTTACTGAGCTAGTAAATGATTTGTATAATAATGGGTTGCCATCAAATCTCTCATCAGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCGGAACTTCAATATCTAGCTAATCCAGTATCAAGCCATGTGCAAAGTGCTGAGCAGCATAACCAAGATGTTAACTCTTTGGGCTTAATTTCTGCTTTGAAAACTGTTGAAGCAGTCGAGATATTGAAGCTCATGTCTTCCACTTATCTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAATTTTCAACAACACAGTCAAGAATACAGTAAGCAGAGTTGCACAGAAAATATTAATTACAGAAGACAGAGAAGAAATTAACCCATTTCGACTTTGTGAGAAAGATTTGCTTAAAGTGGTCGACAGAGAATATGTATTCTCATACATTGATGATCCCTCCAATGTTACGTACCCATTGATGACGAAACTAAAGCAAGTACTTTATGAACAAGCACACATCAGTGCCATCAATGACAAGAATGTGAGCTTGTTGATTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAGATTGAAAATGCAAGAGTGGCTTATGAGAATGGCAATCCAGCAATTCCAAACAGAATTAAGGAGTGTAGGTCATATCCACTGTACAAGTTTGTGAGGGAGGAGTTAGAGATAGGGCTGCTCACTGGAGAAAAGACTCTCTCACCAGATGAGGAATTTGAAAAAGTTTTTACAGCCATGAGTCAAGCAAAGATTATTGACCCAATTCTGGAATGTCTTGGAGATTGGAACGGGGTTCCCATCCCAATATAA 2151 0.4305 MGTIIPQIGSQSVSSESKWLSVSDTDPLNWGEAADSLKGSHLDEVKRMVAEYRKPVICVGGGETLTISQVAAVANHNLQAKVDLSESARAGVDASCEWIIENIKKGTAIYGVTTGFGAASHRRTEQGLALQKEMVRFLNCAIFGYETELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILQAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLTGRRNSKAVGPSGESLNAKEAFHLAGLHSGFFELKPKEGVALVNGTAVGSGVASVVLFEANILALLSEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKVQQADPLQKPRKDRYALVTSPQWLGPQIEIIRYSTKSIEREINSVNDNPLIDVTRNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSSGRNPSLDYGFKASEVAMAAYCSELQYLANPVSSHVQSAEQHNQDVNSLGLISALKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFNNTVKNTVSRVAQKILITEDREEINPFRLCEKDLLKVVDREYVFSYIDDPSNVTYPLMTKLKQVLYEQAHISAINDKNVSLLIFEKIGAFEDELKSLLPKEIENARVAYENGNPAIPNRIKECRSYPLYKFVREELEIGLLTGEKTLSPDEEFEKVFTAMSQAKIIDPILECLGDWNGVPIPI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02129 716 PANTHER PHENYLALANINE AMMONIA-LYASE 21 716 - -
Cca05g02129 716 Gene3D Fumarase/aspartase (Central domain) 265 711 - -
Cca05g02129 716 Gene3D - 530 651 IPR023144 -
Cca05g02129 716 CDD PAL-HAL 63 527 IPR001106 -
Cca05g02129 716 PANTHER HISTIDINE AMMONIA-LYASE 21 716 IPR001106 -
Cca05g02129 716 Gene3D - 18 264 IPR024083 -
Cca05g02129 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Cca05g02129 716 Pfam Aromatic amino acid lyase 65 530 IPR001106 -
Cca05g02129 716 SUPERFAMILY L-aspartase-like 26 716 IPR008948 GO:0003824
Cca05g02129 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02129 Cca-Chr5 40999959 41002860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02129 16 716 Monolignol Biosynthesis Gene Families AT2G37040 72.792 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02129 K10775 - gmx:100787872 1272.69