Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02127 ATGGCGCAGCAACTTCCGTGTGACTCTGATGGCCAATGCATGCTTTGCAAACAGAAACCCTCTCCCTCCCAAACTCTCGCGTGTCGCACGTGCGCCACACCATGGCACCTTTCTTGTCTCCCTTCGCCCCCTCTCTCCCTCTCCGACACCCACTGGGACTGCCCCGATTGCTCCGACCTTTCCAATCATCAACCCGTTGCCCCCTCCGCCCATCTTCTCTCCGCCATTCGCCACATTCAGTCCGACGCTTCACTCACTGACCATCAAAAGGCCAAAAAGCGTCAACAACTCCTCGCCGGCGCCGGCGGATCCTCCGCAGAGCCCTCCAAGACCACCGATATATTCGACGGAAGCTTAAACTGCTCTTTTTGCATGCAGTTACCGGAGAGACCAGTCACGGTTCGTTTGGTTTTCTTCTCTTTGGTTTTTTTTCCCCTTTTCTTTTTATATATTTATGAGAGTTTTGCATTTCAGACTCCTTGCGGACACAACTTCTGTTTGAGATGTTTCGAGAAATGGATCGGACAGGGAAAACGCACATGCGCAAATTGCCGGGCTCTGATCCCAGCGAAGATGGCGAGTCAGCCCAGAATCAATTCCCAGCTGGCGATGGCCATTCGATTGGCGAAAGTGGCCAAGTCAGGTGGGCCTTCCGGGGCGCCCAAGACTTATCATTTTGTCCACAATGAGGATCGGCCCGACACTGCTTTCACGACAGAGCGGGCTAAGAAAACTGGGAAGGCGAACGCCTGTAGTGGTAAGATTTTCGTCACTGTTCCTCCCGACCACTTTGGGCCCATTCCGGCTGAGAACGACCCGACTCGTAACCGTGGCGTTCTTGTTGGGGACACGTGGGGTGACCGCCTGGAGTGTCGGCAGTGGGGTGCTCATTTGCCTCATGTTGCCGGCATTGCTGGACAGAGTGCTTATGGTGCTCAGTCTGTTGCCCTTTCTGGTGGCTACGAGGATGATGAGGACCATGGTGAATGGTTCCTCTACACTGGTAGTGGTGGCAGAGATCTCACCGGTAACAAGCGCACCTCCAAGGTCCAATCCTTTGACCAGTCCTTTACCAGCTTGAATGAGGCCTTGAGACTCAGCTGCAAAAAGGGTTTTCCTGTTAGGGTTGTAAGGTCGCACAAGGAAAAACGTTCCTCTTACGCACCAGAATCTGGAGTGCGTTATGATGGGGTTTATAGGATAGAGAAATGCTGGCGCAAGGATGGAATTCAGGGTTTGAAGGTCTGTAGGTATTTGTTTGTAAGATGTGATAATGAGCCAGCACCGTGGACGAGTGATGAGTGTGGAGACCGACCCCGCCCGCTGCCTAAAATTGATGAGCTGAAGGGTGCAGAGGGTGTAACTGAGAGGAAGGGTGATCCATCATGGGATTATGACGAGGAAAAGGGGTGCTGGTTGTGGAAGAAGCCTCCGCCAGAGAGCAGGAAATCAGTGGAAACGGTGCATAAAGATGGGACAAAAGTGAGGGTTAAACGAAAAGCAAAGGATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATCTGTCGCAAGGTGTTGTCTTCCCCTCTGACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAACAGGGCTTGTCAAAGTGGACGCACTTTAAGAGCACAGAAGAGTGTTATGAAATGCCCATCATGTTCAAATGACATTGCTGACTTTCTCCAGAATCCACAGGTTAATCGAGAAATGATGGGTGTTATAGAATCACTTCAGAGCCAAGCCGAAGAGGATGAAAAATCTGAAGAGTCAAGTGATAAAAATGATGAAAATCTGCATGATGCGATGGAGGTTTCAAAATCTACTGATTCTAGTGAGAAAGTCCTGGAGGAAATTAAGGACAGTGATTTGAATCAACCACACAAACGAAGGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTGATGCATGGCTGCGATATTTTTTTGGATCATGGATTATCATTGATGTTGAAAACATTGAGTGCTAG 2103 0.4803 MAQQLPCDSDGQCMLCKQKPSPSQTLACRTCATPWHLSCLPSPPLSLSDTHWDCPDCSDLSNHQPVAPSAHLLSAIRHIQSDASLTDHQKAKKRQQLLAGAGGSSAEPSKTTDIFDGSLNCSFCMQLPERPVTVRLVFFSLVFFPLFFLYIYESFAFQTPCGHNFCLRCFEKWIGQGKRTCANCRALIPAKMASQPRINSQLAMAIRLAKVAKSGGPSGAPKTYHFVHNEDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGDTWGDRLECRQWGAHLPHVAGIAGQSAYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLTGNKRTSKVQSFDQSFTSLNEALRLSCKKGFPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKDGIQGLKVCRYLFVRCDNEPAPWTSDECGDRPRPLPKIDELKGAEGVTERKGDPSWDYDEEKGCWLWKKPPPESRKSVETVHKDGTKVRVKRKAKDVSVKERLLKEFGCQICRKVLSSPLTTPCAHNFCKACLEGAFSGQSFIRNRACQSGRTLRAQKSVMKCPSCSNDIADFLQNPQVNREMMGVIESLQSQAEEDEKSEESSDKNDENLHDAMEVSKSTDSSEKVLEEIKDSDLNQPHKRRKEXXXXXXXXXXXXXXXXXXXXXXXXXKSDAWLRYFFGSWIIIDVENIEC 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02127 700 ProSiteProfiles Zinc finger PHD-type profile. 10 60 IPR019787 -
Cca05g02127 700 SUPERFAMILY RING/U-box 149 196 - -
Cca05g02127 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 218 IPR013083 -
Cca05g02127 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 627 IPR013083 -
Cca05g02127 700 ProSiteProfiles Zinc finger RING-type profile. 516 574 IPR001841 -
Cca05g02127 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 158 650 IPR045134 -
Cca05g02127 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 134 IPR045134 -
Cca05g02127 700 SUPERFAMILY RING/U-box 498 548 - -
Cca05g02127 700 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Cca05g02127 700 ProSitePatterns Zinc finger PHD-type signature. 13 57 IPR019786 -
Cca05g02127 700 SMART G9a_1 269 426 IPR003105 -
Cca05g02127 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 75 IPR013083 -
Cca05g02127 700 MobiDBLite consensus disorder prediction 591 657 - -
Cca05g02127 700 Coils Coil 648 652 - -
Cca05g02127 700 Gene3D - 245 440 IPR036987 -
Cca05g02127 700 SMART ring_2 13 57 IPR001841 -
Cca05g02127 700 SMART ring_2 516 573 IPR001841 -
Cca05g02127 700 SMART ring_2 121 184 IPR001841 -
Cca05g02127 700 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 134 - -
Cca05g02127 700 CDD RING-HC 152 184 - -
Cca05g02127 700 MobiDBLite consensus disorder prediction 599 654 - -
Cca05g02127 700 SUPERFAMILY FYVE/PHD zinc finger 7 60 IPR011011 -
Cca05g02127 700 SMART PHD_3 12 58 IPR001965 -
Cca05g02127 700 Pfam Zinc finger, C3HC4 type (RING finger) 121 184 IPR018957 GO:0046872
Cca05g02127 700 Coils Coil 678 678 - -
Cca05g02127 700 ProSiteProfiles Zinc finger RING-type profile. 121 185 IPR001841 -
Cca05g02127 700 SUPERFAMILY PUA domain-like 248 442 IPR015947 -
Cca05g02127 700 Pfam SAD/SRA domain 277 425 IPR003105 -
Cca05g02127 700 Pfam RING-type zinc-finger 516 557 IPR027370 -
Cca05g02127 700 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 158 650 - -
Cca05g02127 700 ProSiteProfiles YDG domain profile. 274 422 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02127 Cca-Chr5 40980251 40983310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02127 1 607 C2H2 Transcription Factor Family AT5G39550 58.548 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02127 K10638 - gmx:100781044 1101.66