Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02114 ATGGGGACCATTATTCCACAAATTGGCAGCCAAAGTGTTTCCTCTGAGTCGAAGTGGTTGTCTGTGAGTGACACAGATCCGCTGAACTGGGGTGAGGCAGCGGATTCACTCAAAGGTAGCCACCTTGACGAAGTAAAACGCATGGTGGCAGAGTACCGCAAGCCAGTGATCTGTGTGGGTGGGGGAGAAACACTAACTATATCACAGGTGGCTGCTGTTGCCAACCATAACTTGCAGGCTAAGGTTGACCTTTCAGAGTCTGCAAGGGCAGGCGTCGACGCCAGCTGCGAGTGGATCATAGAAAACATTAAAAAAGGGACTGCCATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCCCACAGGCGAACTGAACAAGGCCTTGCTCTTCAGAAGGAAATGGTTAGAGCGCTGATCCACAACGCGAACTCAACTTACGTTGGTTTTGTTTGCGCACGAGGACGCCAAGTCTCATCCTACGTGTCAGCTTTTTATTGGACGGATGAGCTGCATGAGGCACACAGAAAGATGAGATTATTATCGTTGAGTCATGCTTTGGTGTTTGTGTTAATTGGGGCGTTGTGGAACTTGCAAGGGTTAGAGGGTATCCGATTTGTGATAGACAGAGACGAGTGTTTCTCCCATGATGTCAAGTACGAGGGTGACACTGTCCATGTCTCTTTCGTTGTTATTAAGGCTGATTCTCCCTGGCATTACGGCGACGAAGGTGTCGATCTCGTGGTAAAGGGACCTTCTGGTGAGCAAATTCAAGATTTTCGTGACAAGACCAGTGAGAAGTTCGAGTTTGTGGCTCACAAATCAGGGGTCCATAAATTTTGTTTCACCAACAAGTCTCCTTATCACGAAACTGTCGATTTTGATGTACATGTCGGTCACTTCTCTTATTTTGAGCAACATGCAAAAGATGAGCATTTCACCCCTTTGCTGGAGCAGATAGGAAAGTTGGAAGAAGCTCTCTACAACATTCAGTTTGAACAGCATTGGTTAGAGGCTCAGACTGACCGCCAAGCAATAGTGAACGATGCAATGAGCCGAAGAGCAGTACACAAGGCAATTTTTGAATCAGTAGCACTGATTGGGGCTAGTGCGCTTCAAGTCTACCTTTTACAGCGATTGTTTGAACGAAAGTTGGGTACCTCAAGAGTTTAG 1170 0.4709 MGTIIPQIGSQSVSSESKWLSVSDTDPLNWGEAADSLKGSHLDEVKRMVAEYRKPVICVGGGETLTISQVAAVANHNLQAKVDLSESARAGVDASCEWIIENIKKGTAIYGVTTGFGAASHRRTEQGLALQKEMVRALIHNANSTYVGFVCARGRQVSSYVSAFYWTDELHEAHRKMRLLSLSHALVFVLIGALWNLQGLEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPSGEQIQDFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETVDFDVHVGHFSYFEQHAKDEHFTPLLEQIGKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAVHKAIFESVALIGASALQVYLLQRLFERKLGTSRV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02114 389 PANTHER TMP21-RELATED PROTEIN-RELATED 200 385 - -
Cca05g02114 389 Pfam Aromatic amino acid lyase 65 138 IPR001106 -
Cca05g02114 389 ProSiteProfiles GOLD domain profile. 210 297 IPR009038 -
Cca05g02114 389 Pfam emp24/gp25L/p24 family/GOLD 210 381 IPR009038 -
Cca05g02114 389 SMART EMP24_GP25L_2 202 381 IPR009038 -
Cca05g02114 389 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 200 385 IPR015720 -
Cca05g02114 389 Gene3D - 18 207 IPR024083 -
Cca05g02114 389 SUPERFAMILY L-aspartase-like 26 141 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02114 Cca-Chr5 40877597 40884981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02114 16 207 Monolignol Biosynthesis Gene Families AT2G37040 49.479 2.25e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02114 - - gmx:100527418 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02114 05 40877597 40884981 Cca05g02114 05 40877597 40884981 ECH