Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02098 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACCTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCCGGGGATTTGGATTTGTTGTTTTTTCGGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTCGGGATGATCAGAACATACTGAGTAGAAACAGCGGAAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTCGTAGTTATGTATGATCACAACACTCAGAGGCCACGAGGTTTTGGATTTATCACTTACGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGAGAGCAGTTCCTAAGGAGTTATCGCCAGGGCCAAGCCGCACCCCGCTTGGTGGATATAACTATGGTATTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGTTATACCCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGTGGATTTGCTCCTTTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGTGGAAATGCAAATTTCAATAACAATCTTAGCTACGGTCGGGGAGTAAATCCTTATTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTAACTCGAAATTTGTGGGGTAATGGTGGCCTTAATTATGGAACAAGTTCTGCAAATTCTAATGCATACATTGGATCAGGGAGTGGGAGTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGGGAGGAGTGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGAACTGGAGGGTACGGAAGAAACTCTGGCACCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAACAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCTGATGTCTCTGCCAAGAGTTCTCCTGGTTATGTTGGGGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCTACATAG 1437 0.4426 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGISRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVAGGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNNNLSYGRGVNPYFIGNSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLNYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSAISGQGGVNNMSQSSGNLGYGGGDNNYGLGTGGYGRNSGTTFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02098 478 MobiDBLite consensus disorder prediction 456 478 - -
Cca05g02098 478 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Cca05g02098 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cca05g02098 478 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Cca05g02098 478 Gene3D - 4 88 IPR012677 -
Cca05g02098 478 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Cca05g02098 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Cca05g02098 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Cca05g02098 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Cca05g02098 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Cca05g02098 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cca05g02098 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Cca05g02098 478 Gene3D - 103 189 IPR012677 -
Cca05g02098 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cca05g02098 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02098 Cca-Chr5 40759516 40764614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02098 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 27.541 3.36e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02098 K14411 - gmx:100795907 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02098 05 40759516 40764614 Cca05g02098 05 40759516 40764614 ECH