Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02096 ATGCCCGCAGAGAAATCGAACAGTTGCGATACCGAAGTGGAAGCGTTTGCGGAGGTTGATCCAACGGGTAGGTTTGGGCGTTACAGCGATCTGCTAGGGTGTGGTGCAGTGAAGAAGGTTTACAGAGCCTTCGATCAGGAAGAAGGCATTGAGGTGGCGTGGAATCAGGTTCGGCTGAGGAACTTCAGCGAAGACCCCGTTCTCATCAACCGCCTTCACTCTGAGGTTGACTTGCTGAGCACCCTCAGCAACAAGTACATCATTGTGTGCTACAGTGTGTGGAAGGATAATGAGCACCACAACATCAACTTCATCACTGAGGTTTGTACTTCTGGGAACCTCAGGGATTACCGCAAGAAGCATCGCCATGTCTCCATTAAGGCCTTCAAGAAATGGTCCAAACAGGTCCTTGAGGGGTTGGAGTACCTTCACACGCATGACCCCTGCATCATTCACAGGGATCTCAATTGCAGTAACATCTTTGTTAACGGCAACATTGGCCAGGTGAAAATTGGTGATCTCGGATTGGCTGCAATAGTGGGACGGAACCATGCAGCACATTCAATTTTAGGGACACCGGAGTACATGGCACCCGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATTTACTCTTTCGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCCTACAGTGAATGTGACAGTGTGGCCAAGATATACAAAAAGGTCACCATGGGAATTAAGCCTGAGGCCTTGAGCAAAGTTTCTGATCCTGAGTTGAAAGCATTCATTGAGAAGTGCATAGCACAGCCAAGGGCAAGACCTTCAGCCACGGATCTCCTTAAGGATCCTTTCTTTTATGAACTCAAAAATGATGAAGAATCAACTCCTATCAGTTGA 894 0.4754 MPAEKSNSCDTEVEAFAEVDPTGRFGRYSDLLGCGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVDLLSTLSNKYIIVCYSVWKDNEHHNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRNHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTMGIKPEALSKVSDPELKAFIEKCIAQPRARPSATDLLKDPFFYELKNDEESTPIS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02096 297 CDD STKc_WNK 24 284 - -
Cca05g02096 297 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02096 297 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Cca05g02096 297 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Cca05g02096 297 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Cca05g02096 297 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02096 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 1 288 - -
Cca05g02096 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02096 Cca-Chr5 40738741 40740289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02096 10 284 MAP Kinase Kinase Kinase AT5G55560 78.182 6.77e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca05g02096 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02096 K08867 - gmx:100798280 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02096 05 40738741 40740289 Cca05g02096 05 40738741 40740289 ECH