Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02094 ATGGTTTCTTCAGACAAAAGTGCTGATCAAAATATCCCTTCTGATAGATTGCAGCAGAGAGTGAGTCCTGATAGTGATATTACACTATCACAAGGTCATGATACTAAAAATGAACTGTCCAAACCAGAGGGAGCAACAAGCATTCCTTCTATTGTAGCTAAAAATGAAGGGAAGGATTCTGATCAAGAAGGAAGCACATGTTCTTTACCACTTGAGAAACATTTGCAGAGCCCTGATACTCTTTCACATGAATTGCCTCCATTGCAATCAAATCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTAAAGGGGAATGAATTTATAAGGAGTTATTACAAGTGTACACATCCAAATTGCCAGGCAAAAAAGCAATTGCAGCAGTCAAATAATGGGCATATCACAGATTCCATTTGTATTGGTCAGCATAATCATCCTAGACCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTCTGCCTATTGTTGAACAAACACCGCCCAAACCCTCATTAGCCGATGTGGAAGACAAAACATCGATTGAGCAAGGATGTATGCCGCAACAGATCAAGCCTTTACAGTCCATTCCGACTACAAAAGTTTCGCCAGTTATTGAGTTGAAAGCAGCGCATTTACAATTGACTAAGGCAAAGAATCAGGCTCATGGCAATGAGGATCCGGAGTCAAAGCGGCTGAAGAAAAACAATAGTAATGCTGATGCCACTGGAGTTGACATGTCAACTTGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATCTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAACTAGTTAAAGGGAATACAAACCCAAGAAGTTATTATCGGTGCTCAAATCCTGGCTGCCCTGTCAAAAAGCATGTGGAGAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCACGAAATCCCCCCTGCAAGGACTGTCACTCACAATGCAGCTACAAATACTCACACAACAACCACTAATGGCGAGGCAGGGACCAAATCTGGAGGTAATACTGTTTTTGTTGATACAGGGGAATGCAGCGACCTGGACTCAGTGAGTAGATTAACCGAGCAACTAAATGACAAGTCAAATACTAAGTCAAAGGACGGTGATAAGCTTGAGTTTCGTGTGATCAGCCTTTCTAACGAGGGTCCTGAAATTAAATTTAGCAAGCAACAGCAACAAAAAGATAACTCAGGTGCTAAAAACAATTCTGTCAGCAATGACATCGTATGCCATTCAAGTTCTGGAGTTCCGTGTAGATCAAATGAACAGCTGGAAGATGAGGTAAAAACTATATCAGAAGGAAGTAAGGATTGCCTTAATGTGGTTGCTGTTTGTGATACTCCTAGTACAGAAAATGAATTTAATAAGCAATCAGCAGCTGATGCGGAACCCGTCCAAAGCTAA 1500 0.412 MVSSDKSADQNIPSDRLQQRVSPDSDITLSQGHDTKNELSKPEGATSIPSIVAKNEGKDSDQEGSTCSLPLEKHLQSPDTLSHELPPLQSNQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSNNGHITDSICIGQHNHPRPQLNSTVSVECVLPIVEQTPPKPSLADVEDKTSIEQGCMPQQIKPLQSIPTTKVSPVIELKAAHLQLTKAKNQAHGNEDPESKRLKKNNSNADATGVDMSTCESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHEIPPARTVTHNAATNTHTTTTNGEAGTKSGGNTVFVDTGECSDLDSVSRLTEQLNDKSNTKSKDGDKLEFRVISLSNEGPEIKFSKQQQQKDNSGAKNNSVSNDIVCHSSSGVPCRSNEQLEDEVKTISEGSKDCLNVVAVCDTPSTENEFNKQSAADAEPVQS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02094 499 MobiDBLite consensus disorder prediction 1 35 - -
Cca05g02094 499 ProSiteProfiles WRKY domain profile. 98 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 MobiDBLite consensus disorder prediction 350 369 - -
Cca05g02094 499 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 449 IPR044810 GO:0003700
Cca05g02094 499 SUPERFAMILY WRKY DNA-binding domain 99 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 SUPERFAMILY WRKY DNA-binding domain 270 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 ProSiteProfiles WRKY domain profile. 273 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 MobiDBLite consensus disorder prediction 230 258 - -
Cca05g02094 499 Pfam WRKY DNA -binding domain 104 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 Pfam WRKY DNA -binding domain 279 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 SMART WRKY_cls 278 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 SMART WRKY_cls 103 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 MobiDBLite consensus disorder prediction 235 249 - -
Cca05g02094 499 MobiDBLite consensus disorder prediction 415 438 - -
Cca05g02094 499 Gene3D WRKY domain 265 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g02094 499 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 449 - -
Cca05g02094 499 MobiDBLite consensus disorder prediction 1 95 - -
Cca05g02094 499 Gene3D WRKY domain 92 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02094 Cca-Chr5 40727750 40731802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02094 88 360 WRKY Transcription Factor Family AT2G04880 46.763 4.82e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g02094 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02094 K18834 - gmx:100781219 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02094 05 40727750 40731802 Cca05g02094 05 40727750 40731802 ECH