Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02093 ATGCAGGCATCAGAGCAACATAGAAGTTCAAGTATGTACTATCAACCATTACAACAACAAATTGAGACCTACTGCTTGCCGCAGTATCGGACTCTAAATCAACAGCTTTACTACCATGATGGAGGTCATGGAACCCACTTTTCCACCCCAAGTTCTTCTGAACTTTACTGCACATTGGAATCATCTTCTGTGTGTGGCAGTTTCACTCTTTACAACTCTCCTTCAACTGTTAGTTTTTCACCTAATGGTAGTCCCATATCACAGCAAGATTCTCATTCATATCCAGCTGACCAGTATCATTCCCCTGAGAATACCTATGGCTCTCCTATGAGCGGATCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAGCTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTATGACAGTGCCATCAGCAATGGAGTCAACTTTGCTTCACTTGAGACAGATAGTTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTAAGGCACATCCTTATTTCATGTGCCAATGCCGTTGCTGACAATGATTTGCTAATGGCACAATGGCTGATGGATGAATTAAGGCAGATGGTGTCAGTTTCCGGTGATCCAATTCAACGGTTGGGAGCATACATGTTGGAAGGACTTGTGGCACGATTGGCTGCCTCAGGGAGTTCAATATACAAATCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATATTGTATGAGGTTTGCCCCTACTTCAAATTTGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGACAGAGTTCACATAATTGATTTCCAAATTGCTCAAGGAAGTCAGTGGATCACTTTAATTCAGGCTTTTGCAGCTAGACCTGGCGGGCCACCACACATCAGGATTACAGGTATTGACGATTCAACATCAGCTTATGCCCGTGGTGGTGGACTACACATAGTGGGGAGGAGGTTATCAAAGCTTGCTGAACATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTAAACTACATAACCTTGGAGTTCGACCAGGAGAAGCTCTGGCTGTAAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACTCAGAATCACAGGGATAGGCTGTTGAGATTAGTTAGGAGCCTATCGCCAAAGGTGGTGACGCTTGTTGAACAAGAATCTAATACAAACACATCTGCCTTCTTTCCACGTTTCCTTGAAACTCTGGAATATTACACAGCAATGTTTGAGTCAATAGATGTGACTCTTCCCAGAGATCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGACTTGGTTAACATCATAGCATGTGAAGGGGCTGAGAGAGTGGAACGCCATGAACTGCTTGGGAAGTGGAGGTCAAGATTTACAATGGCAGGTTTCACTCCATACCCTTTAAGTTCATTGGTGAATGGTACAATCAAGAAATTGCTTGAGAACTACAGTGATAGATATAGACTTGTAGAGAGAGATGGAGCTCTTTATCTGGGTTGGATGAATAGAAATTTGGTGGCTTCTTGCGCTTGGAAATGA 1635 0.4281 MQASEQHRSSSMYYQPLQQQIETYCLPQYRTLNQQLYYHDGGHGTHFSTPSSSELYCTLESSSVCGSFTLYNSPSTVSFSPNGSPISQQDSHSYPADQYHSPENTYGSPMSGSCITDDLSSFKHKLRELESVMLGPDSDNLDSYDSAISNGVNFASLETDSWRQTMVAISSKNLRHILISCANAVADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKSLRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVKLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTSAFFPRFLETLEYYTAMFESIDVTLPRDHKERINVEQHCLARDLVNIIACEGAERVERHELLGKWRSRFTMAGFTPYPLSSLVNGTIKKLLENYSDRYRLVERDGALYLGWMNRNLVASCAWK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02093 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 544 IPR005202 -
Cca05g02093 544 Pfam GRAS domain family 174 544 IPR005202 -
Cca05g02093 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
Cca05g02093 544 MobiDBLite consensus disorder prediction 79 107 - -
Cca05g02093 544 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02093 Cca-Chr5 40724707 40726341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02093 112 544 GRAS Transcription Factor Family AT5G48150 77.449 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g02093 GRAS 4.6e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02093 - - gmx:100808300 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02093 05 40724707 40726341 Cca05g02093 05 40724707 40726341 ECH