Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02091 ATGGAAATGGGTAGTTTGGTGATGCAGGCACAAATATGGAGGTTTGTTTGTTTAATATCAAGTGTAGTAGGATTAGTTTGTTATGCTCTCAGTTCCTCTTTCAACCTTTTATTCGGAAAGTGGAACCTGCTGAAGATGCTGTCTTACAGTGTTTTCAGTTTCACAATCTGCTTAGCTGTTTGGTTTGCAAAGGTATGCCAACTTTCATACTCAAGGAATCTTATGTGCAAAGCTCATATGTCAGTTGTGGTTTTGACAGCCACATCAGTGTATTCCTTTTTCTATGACAAAGAAGTGAACACAAAGCCTGATGCATATAGTCTCATTTCTTGTGCTGCATTTGCTGTCATGTCTCTCAGCTTATCCAGGCAAACTCACCTGGGATTCGAATTGGATATCCTGTATTTCTTCTTAGGCTGTTTTATCTTACAACTCATGAAGATCAAATTGTTGTTAGTCATTGTTGGAGTCTGTTTTAGTTATTCTCTCATCATTCTTCGATCCTCTCTAGAATCATCAGATTATACCCTACCTCTATTCCACCACCCCGACATAACTGATTCATTACAACCCCATCCTGATTTTGCTCTTGTTGTGCCTGACTGTGGTAGTAATTACATGCAAACAGTGCTGAAGCACAACCTTGTTGCATGTGCCAAAGCAATTGCAGACACTGATTTGATAATGGCAGAATGGTTTGTGAGAAAAATAAGGGAGATGGTGTCAGTTTCTGGTGAACCAATGCAAAGATTGGGAGCATATATGTTGGAAGGGCTTGTTGCAAGATTGGAAGGCACTGGGGGCACAATCTACAAAGCTTTGAAATGCTATGAAGCAGCAAATGCCAAGCGGCTCTCCTACATGCACATGTTTCATCAAATATGTCTCCTCCACTTCAAATTTGGATACATGTGTGCAAATGGAGCCATTGCAGAAGCTATGAGAAACGAAGACAGAATTCATATAATTGATTTCCAAATTAATGAAGGAATTCAGTGGCTCACTCTAATTCGGGATTTTGCAGCAAGGGCAGGGGGAGCTCCCCACATTCGGATTACTGGTGTTGGTGATTCAACATCAGCTGATGCACTGCAAATGGTGGGAAATAAGTTATCAAAACTAGCTGAGGATTTGAAGGTGCCCTTTGAATTTCATGCTGTACCTGTCTCTGCTTGTGATGTTCAGTTACAAAACCTTCTAATTCAATCTGACGAGGTTCTGGCCGTAAACTTTGCATTCATCCTACATCATGTGTCTGAGAATCATAGGGACAGACTGTTGAGATTGGTTAGGAGCCTATCACCAAAGGTTGTCACACTTGTTGAACAAGAATCTAACACGAACATTGTGGAATTCTTTCCGCGTTTCCTTGAAACTCTGGACTATTATTCAGCGATGTTCGAGTCAATGAATGCTAATGTGGATCTTCCCGAAGAGTATAAAGAACGAATCTATATTGAGCAGATTTGCTATGCAAGAGACATAGTTAACATCATAGCTTGTGAAGAGGCTGAGAGGGTGGAACGGCATGAGCTGCTTGGAAAGTGGAGATTAAGATTTGCAATTGCTGGTTTCACTCCTTACCCTTTGAGTCCATCGGTAAATGCTACCATTAAGAAATTACTTGAGAACTATGGTGATAGATATAAATTTGAAGAGAGAGATGGAGCTCTCTATCTGGGTTGGATGGGTAGAAATTTGGTGGCTTCTTGCGCATGGACCAGTCTTTATGTTACTACCCCTGAAAGTTAG 1752 0.4087 MEMGSLVMQAQIWRFVCLISSVVGLVCYALSSSFNLLFGKWNLLKMLSYSVFSFTICLAVWFAKVCQLSYSRNLMCKAHMSVVVLTATSVYSFFYDKEVNTKPDAYSLISCAAFAVMSLSLSRQTHLGFELDILYFFLGCFILQLMKIKLLLVIVGVCFSYSLIILRSSLESSDYTLPLFHHPDITDSLQPHPDFALVVPDCGSNYMQTVLKHNLVACAKAIADTDLIMAEWFVRKIREMVSVSGEPMQRLGAYMLEGLVARLEGTGGTIYKALKCYEAANAKRLSYMHMFHQICLLHFKFGYMCANGAIAEAMRNEDRIHIIDFQINEGIQWLTLIRDFAARAGGAPHIRITGVGDSTSADALQMVGNKLSKLAEDLKVPFEFHAVPVSACDVQLQNLLIQSDEVLAVNFAFILHHVSENHRDRLLRLVRSLSPKVVTLVEQESNTNIVEFFPRFLETLDYYSAMFESMNANVDLPEEYKERIYIEQICYARDIVNIIACEEAERVERHELLGKWRLRFAIAGFTPYPLSPSVNATIKKLLENYGDRYKFEERDGALYLGWMGRNLVASCAWTSLYVTTPES 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02091 583 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 208 574 IPR005202 -
Cca05g02091 583 ProSiteProfiles GRAS family profile. 202 574 IPR005202 -
Cca05g02091 583 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 208 574 - -
Cca05g02091 583 Pfam GRAS domain family 211 574 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02091 Cca-Chr5 40701005 40702756 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02091 211 573 GRAS Transcription Factor Family AT5G48150 64.706 1.18e-171 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g02091 GRAS 1.3e-118 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02091 - - ccaj:109814368 1151.35