Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02089 ATGTTCTGCTCAAGCTGGGACTTGCCTAGAATCTTCAGGATTGTTACTTTGGTGAATTTGGCAAGGATGTCTGTGAATCGAAGGCTTTCTGCTTCAAATGGTAGATTGCCACCGAATATGAAGTCTTGGAAGGTGAATGAGCCTCTGCATGGGACTAATTATCTCAAGACATGTAGGAGGAAGCTCTTGCTTCTTTGGTTTTTTGGCTTTGTGGCTGTAGGGACTGTTTGGTTCATCTTGAGTTTCAATAGTAAGTATTTGGTGAGCAAGGAGAATGAAGCAATATGTGAAGAGAGAGCACGAGTGTTGCTACAACGTTACAATGTTAGTAGGAAAGAGATTCATGCTTTGGCTTCCTTGTTCTATGGATCAGATCAGAACATTGTGCAATCATGGGAACTGAGGGCCTCTGCAATTTGGGATCATCTGAGTTCATCTAATTTTGTTAGAGGATGCTGGGTTCTCATAGGAATTATAATGTCCTGCTTCTGTTTGCTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGCTGCTCAGAAAAAGCAGATGCAAGGTTTAGCACGGGGTCCTTCAAAGAGTGCCGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCTTCTGGTTATTTTGGCACCTAAATATGGACATTATGCAGAGAAGAGAAGAAATGCTAGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAGTTTAATGTAAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACCTTTCACCACGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTAGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGGAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTACAAGATTGTATTCCAGAAAATTTGGATCCAGCACCCATTCAAGATGAATATGCCCCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGATCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATGACACTAATCTTCCTTTAGATGCTACACCAGAGCAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTCAATGTTTATGACACAACTAATGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTATTACACATAAGCAGCCTGGATTTTGGGGATCCGCTAAGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGGTGCTTGTTATTACTTTGCTTTTGGGTCATATTTTTTATGCAGCGATAAATAGAATAGCAAAAGTTGAGGATGATTATCGTCAAATGAGTGAGCTGAAAGGTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGAACTCCAATGAATGGTGTTTTAGGTATGTTGCAAATGTTGATGCACACTGAGCTCGATGAGAACCAGATGGATTGTGCCCAAACTGCCCATAATAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTCACATTTGATCCACGTGCTATTCTAGACGAAGTTTTATCACGTTTCTCTGAAAAATCTAAGGAAAAAGAAATAGAGCTGGCTGTTTATGCATCTAATCAAGTACCCGAAGTAGTTATTGGTGATCCTAAACGGTTTCGACAAATAATTACTAATCTTGTTGGAAATTCACTTAAGTTTACTCATGATAAAGGACATGTGTTTGTCTCGGTTCATCTGGCGAATGAAGTGAAGAACCCACTTCATATTATGAATGCAGTGCTGAGAGAAGGCTTAAATTTGAATCAGGACATATCAAACAGAACATCTGATACATTAAGTGGGTTCCCTGTATGCAACAAATGGAAAAGTTGGGCACATTTTAAGAAGTTAAGTAGCACAAACGAACCTGAAATTATTCAACTACTGGTGATTGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCTGTATATTCGCACCTTTTATGCAGGCTGATAGTTCCACCTCCCGAACATATGGTGGAACTGGAATAGGATTGAGCGTTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGGAAGAACATCTCTGGATGCAATGTGGCAGAATAATCTTTCTGGTTCAGAGTTTCTAGGATTGAGGGCACTAGTTGTAGATAGAAGAAAAATCCGAGCTGAAGTCACAAGATATCATCTGCAGAGATTGGGAATGTCCGTGGATGTAACTTACAGTCTGAATTCTGCATGCTCTTGTCTATCTAATACTTGCAACATGAGTATACCGACCCAGTTGGCTATGATTCTTATAGACAAGGATGCTTGGAGTTGGGATAAAGAAGGTAGTTTCTTGTACGCAATCAAGAAACATAGAAAGAATGGCATCAAAGGAGATCCAATAAACTTACCGAAGATTTTTCTCCTGGCCACCCATCTTAGTGCCAATGAACATGATGAACTCAACTCATTTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTTAGTTCTTTAATTCGCTCTTACAGAGAATCCCTTGGCATTGTGAAAAAGCAAGTAAATAGGAAAAATGTAATGAAACTCGGGAATTTATTGATGCACAAACAAATTTTGTTGGTTGATGATAATGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTACAGAGATATGGGACAATAGTTACCACTGTGGAGAGTGGCAAGGCTGCTCTAAAGTTTCTTAAACCGCCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCGACAAGGCAAATCCGCAACCTGGAGAGCGAGGCAAATGAGAAAATTGCGTGTGGACAAGCATCTGCTGAGATGTTTGGTAATATCTCCTATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAGGGTTCAAATGAGGAGTGCAGAAAGTGTGGAATGGATGACTACGTGTCTAAGCCGTTTGATGAAGAGCAACTCTATATGGCAATGGAACGTGTATTCAATTCAGATTCATAG 3474 0.4093 MFCSSWDLPRIFRIVTLVNLARMSVNRRLSASNGRLPPNMKSWKVNEPLHGTNYLKTCRRKLLLLWFFGFVAVGTVWFILSFNSKYLVSKENEAICEERARVLLQRYNVSRKEIHALASLFYGSDQNIVQSWELRASAIWDHLSSSNFVRGCWVLIGIIMSCFCLLWRSQKQKLVQGHPAAQKKQMQGLARGPSKSAGRWRKKLLVIFVSLGIIGSFWLFWHLNMDIMQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEEQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVTDTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRQMSELKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMHTELDENQMDCAQTAHNSGKDLISVINEVLDQAKIEAGKLELEAVTFDPRAILDEVLSRFSEKSKEKEIELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMNAVLREGLNLNQDISNRTSDTLSGFPVCNKWKSWAHFKKLSSTNEPEIIQLLVIVEDTGIGIPTDAQSCIFAPFMQADSSTSRTYGGTGIGLSVSKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGGRTSLDAMWQNNLSGSEFLGLRALVVDRRKIRAEVTRYHLQRLGMSVDVTYSLNSACSCLSNTCNMSIPTQLAMILIDKDAWSWDKEGSFLYAIKKHRKNGIKGDPINLPKIFLLATHLSANEHDELNSFGIIDDILMKPLWLSSLIRSYRESLGIVKKQVNRKNVMKLGNLLMHKQILLVDDNAVNRKVAEGVLQRYGTIVTTVESGKAALKFLKPPHNFDACFMDLQMPEMDGFEATRQIRNLESEANEKIACGQASAEMFGNISYWHIPVLAMTADATQGSNEECRKCGMDDYVSKPFDEEQLYMAMERVFNSDS 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02089 1157 Gene3D CHASE domain 276 503 IPR042240 -
Cca05g02089 1157 SMART HisKA_10 557 622 IPR003661 GO:0000155|GO:0007165
Cca05g02089 1157 Gene3D - 621 838 IPR036890 -
Cca05g02089 1157 Gene3D - 1013 1156 - -
Cca05g02089 1157 ProSiteProfiles Response regulatory domain profile. 1016 1153 IPR001789 GO:0000160
Cca05g02089 1157 PANTHER TWO-COMPONENT HISTIDINE KINASE 190 1154 - -
Cca05g02089 1157 PRINTS Bacterial sensor protein C-terminal signature 763 777 IPR004358 GO:0016310|GO:0016772
Cca05g02089 1157 PRINTS Bacterial sensor protein C-terminal signature 781 791 IPR004358 GO:0016310|GO:0016772
Cca05g02089 1157 PRINTS Bacterial sensor protein C-terminal signature 798 816 IPR004358 GO:0016310|GO:0016772
Cca05g02089 1157 PRINTS Bacterial sensor protein C-terminal signature 822 835 IPR004358 GO:0016310|GO:0016772
Cca05g02089 1157 SMART CHASE_2 272 471 IPR006189 -
Cca05g02089 1157 SMART HKATPase_4 669 838 IPR003594 -
Cca05g02089 1157 ProSiteProfiles CHASE domain profile. 272 496 IPR006189 -
Cca05g02089 1157 CDD HATPase_EvgS-ArcB-TorS-like 674 833 - -
Cca05g02089 1157 Pfam His Kinase A (phospho-acceptor) domain 557 622 IPR003661 GO:0000155|GO:0007165
Cca05g02089 1157 CDD HisKA 557 618 IPR003661 GO:0000155|GO:0007165
Cca05g02089 1157 Pfam CHASE domain 275 469 IPR006189 -
Cca05g02089 1157 ProSiteProfiles Response regulatory domain profile. 861 993 IPR001789 GO:0000160
Cca05g02089 1157 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 669 833 IPR003594 -
Cca05g02089 1157 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 611 833 IPR036890 -
Cca05g02089 1157 Gene3D - 223 275 - -
Cca05g02089 1157 Gene3D - 88 123 - -
Cca05g02089 1157 CDD REC_hyHK_CKI1_RcsC-like 1017 1149 - -
Cca05g02089 1157 SUPERFAMILY CheY-like 859 992 IPR011006 -
Cca05g02089 1157 Pfam Response regulator receiver domain 1017 1148 IPR001789 GO:0000160
Cca05g02089 1157 SUPERFAMILY CheY-like 1015 1154 IPR011006 -
Cca05g02089 1157 SMART REC_2 1015 1149 IPR001789 GO:0000160
Cca05g02089 1157 Gene3D - 528 620 - -
Cca05g02089 1157 ProSiteProfiles Histidine kinase domain profile. 564 838 IPR005467 -
Cca05g02089 1157 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 544 623 IPR036097 GO:0000155|GO:0007165
Cca05g02089 1157 PANTHER HISTIDINE KINASE 2 190 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02089 Cca-Chr5 40684153 40694655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02089 146 1153 Miscellaneous Gene Families AT5G35750 64.995 0.0 1313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g02089 CHASE 8.4e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02089 K14489 - gmx:100805107 1816.2