Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02087 ATGCTCCCTCCACGACAGCAGTCACGGGTTGGAGGGCTGCAAACCTCTCTATCTCTAGCTTCTTCAGATCCACGCCTTTCTCCTGAGGAGCCGAGATCAAACTCTGATAATCTCCGTGAATCTCCTACAGAAAGCGCCAGTTCTCGAGAAACTTGGCCTACTGCCGACGCAATCGCTGCGAAGAAGATGGAGAATGGAAAGGCCGAGATTGACTGCCCTGAGCAGTCTGTTATTCGTCGTGTTTCTAGTGCTGATAAAATTAGTCTTCAGGACATTGCAAGGGAACGAGTTGATATAATATGTGAGAAAATGCATCATCTACCAGAAGAATTTCTTGAAGAGCTGAAAAATGGACTTCGAGTTATCCTTGAAGGGGGGAATGGCTCACAGCATAGAGATGAATTTTTCATTTTGAAGAAGCTTGTTCAGAGTAGATCTGATTTAACGGCCAAGACATTGATAAGAGCACATCGAGTTCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGGTATTTGCATCCTAGCATCAGTCTTTCGCAGACTTCGCTTATTGAGATATTTGTATATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCTGCCGATGATTGTACCTGTGAGACATGTGCCAACGGCAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCTTGAGCAACTTATTTGTATGGGCCCTTCTGCAAAGAATGGAGCAGGGCcaagtgaaatggttttcaggtgtcaagcgtgcaacaggacttcagaactgctgggttgggttaaggatgtcttCCAGCATTGTGCACCATCATGGGATGGAGAAGCCTTGATAAGGGAACTTGATTTCGTCAGTAGGATCTTTCATGGTAGTAAAGACCCACGGGGGAGGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAATTGAAAAGTGCAAAAGTGGAACCTAAGGCTGCATGCAGGGCAATATTGATGGTTTTCCAAGAACTTGAACTGGACTCTCCAAAAAGCCTGGAAAATGCAGAAAGTGGTAGGATGATTGCCCCTCAGGAGGCATGTAATAGAATTGCTGAAGTGGTGCATGAGGCTATAAGAAAGATGGAAATGGTAGCCGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCTCTCGATACTTGTGATCGTGAATTAGCAGACAAGGCTAGAGAAGCGGGAGAATTGAAGATGGACAGACAAAAAAAGAAGCTACAGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCCGATATGTTCCAGTTGAAGGCTAACGAGGCTAAAAGAGAGGCTGAGCAGCTCCAGAGGATTGCTCTTGCCAAATCTGATAAATCAGAGGAAGAATACACTAGCAACTATTTGAAGCAAAAATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTATATGAAAAGATCAAATTGCAGGAGACTTCTCGAGTATCACAAAGCAGTAGTGGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTACTCTATAGTGTTCCTCCCAAGGCAGATGGTCAATCTAATGAGTGTCACCCTTTTAGACCAAACCCATGA 1704 0.4184 MLPPRQQSRVGGLQTSLSLASSDPRLSPEEPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKAEIDCPEQSVIRRVSSADKISLQDIARERVDIICEKMHHLPEEFLEELKNGLRVILEGGNGSQHRDEFFILKKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQGYLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAILEQLICMGPSAKNGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALIRELDFVSRIFHGSKDPRGRKLFWKCDDLKEKLKSAKVEPKAACRAILMVFQELELDSPKSLENAESGRMIAPQEACNRIAEVVHEAIRKMEMVADEKMRMFKKARMALDTCDRELADKAREAGELKMDRQKKKLQIEELERIVRLKNAEADMFQLKANEAKREAEQLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQETSRVSQSSSGGDPSSMLMYSKIHDLLYSVPPKADGQSNECHPFRPNP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02087 567 PIRSF UCP025218 1 552 IPR004082 -
Cca05g02087 567 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Cca05g02087 567 MobiDBLite consensus disorder prediction 548 567 - -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Cca05g02087 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Cca05g02087 567 MobiDBLite consensus disorder prediction 1 23 - -
Cca05g02087 567 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Cca05g02087 567 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 557 IPR004082 -
Cca05g02087 567 MobiDBLite consensus disorder prediction 1 53 - -
Cca05g02087 567 PANTHER PROTEIN OBERON 2 1 557 - -
Cca05g02087 567 Coils Coil 433 488 - -
Cca05g02087 567 SMART PHD_3 225 285 IPR001965 -
Cca05g02087 567 MobiDBLite consensus disorder prediction 38 52 - -
Cca05g02087 567 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02087 Cca-Chr5 40665829 40670192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02087 195 297 PHD Gene Family AT5G57380 31.731 8.19e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02087 - - gmx:100795450 1085.48