Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02081 ATGTCCCCAGCAACCACGTTTTCAGACGTTGGTGGTGATGGTGGCAACATTGAACTTCGTGCTACTGCTACCTTGCTCCACACCCGTATATGGCCCAGAACTAGAAGATTATTCATAATCATACGATTCCTCATTTCTGTGAAGAAGCCGACAACTTCTAGAACCTCCCCGTCCGAATCTTATGTTGCAGTTGACATagaagaagaaaaagaagaagaaaaagaagaagaGCGCATTATCAGTGATATTGCTCGAATTGTGAAGGAGAAGGACTTCAAATCGCTTCATGAGCATGGTGGGGTTGACCACGTTGCCAATGTCCTTGCTAGTATACGACTTCAACCCTCTGAGGTGGACATTAATGGTGTGCATGCCACTATACCATTACCAGTTCTTGGAACAAACTTCTCTAGCTTTTTATTGACCAGCTGCAAATGCTACTGTTTCACAATTCTGATGCTGTTGATCTCAGCTGGGTTGTCATTTGCCATAGGGTTCAAGCAGGAGGGACCTAAACAAGGTTGGCATGATGGTGTTGCCATAGTTTCTGCCATTTTGCTACTGGTTGTAGGAAGTTCATTGGCAAACATTTGGCGTGAGAGAAAAAAGTTGAAATTGGCAAAGAGAAAGGATGAGTTGGAGTTCATACGTAAAAAAAGTGATAAGTACCTAATGGGTGACATAGTGCTCCTGTGGCCAGGCGATAAGGTTCCAGCAGATGGTTTGCTTGTAAATGGCATCCTTGTGCTGGCTGGGCCTGATGACCCAATACAAAGCAAACATGACCCTAATGGGAACCCGTTTCTTATCTCTGGTGCAAATGTGATTGGGGGTCAGGGAAAGATGGTGGTAGCATCAATTGAAAACAAAACCAATTTGGCTGAGATTGATACTTTTAATACTGAAGAGTGTAAGAGGGGCTTGTTGGAGCGTCTAATTGAGAAACCAATTTCTTACATTGACATGGCTGCTCTTTTTATCTCTGTACTGGTTGCATTTGTGGTGTTAATTCGCCTAATTTTTGGAAAAGATGGGAACAATAGTGGGTTGCCAGAAATGAAGGGGAAGATCTCAATTAGCTTGTTGATGGAAGCCTTTCAGACAGTTTTTTTGAGACCACAAGGAAGGGTTTCCATTTTAACAGGCCTTGTTACTGTTGCTATACTATGTGTGCAGCATGGAATGCCACTTGTGGTTACAATATCTCTCAAGTGCCAAATTGATAAGGTAGAGCAAAACCAAGATGCAGTTCTTAATGATTTATCAGCTTGTACTACAATGGGGCTGGTAACTGTTGTATGTATTGATGTATCAGGTGGGTTGGTATCTAAACCAATGGAGGTTAGCAGAATATGGATGGGGGAGAAAGATATCAGCAAGGTTGAGGAATCAGAAAAAGATCAACTTGTGCTTCACTTGCTTAAACAAGGAGTTGGTTTGTCAGTCCTTGCACCAGAGATTTCTCTTTCCCCTTTGTACTATTCACTTTTTTCTTGGGCAGAAACAACATTGGAAATGAAAATGAGATCCTTCACAGAAGAAAATTTTGACATTCTTGAGCTCAGCAAACTGAATTCTAGTAAAGAAGGCTGTGGAGTTTTGGCGAGAAAAGTTGGGGACAATGAACGAGATCTGCACTTGCACTGGAGTGGGGCTGCATCCACAATTTTGGAGATGTGTTCACTATACTATGATAGTGCAGGGGAACGCCATGCCATGGAAAATCAGAAGATCAAATTTGAGAAGGTGATTAAAGAGATGGAGGACAGTGACCTTGAGCCAATTGCTTTTGCTTATAAGCAAACACACGAAGAAGAACTTGAGCAAGAAGAACTGATCTTGTTAGGAATGATAGGTCTCAAATACACTATTCCCACAAAATCAGCTTTGGAAAATCTCAGAAATGCTGGAAATACACAGATCAAACTGGTCTCAGAGGATGACATCATGAAAGTGATAGGCATAGCTCGTGAACTAGGACTAGATCATGATAATCTGCTTGAAGGAAAAGATCTTCAAGATTTGAATAAGAAAGCTAGAATAGACAGAGTGGATGGAGCACATGTAATGGGAAGCTTCAGTCCTAAAGATAAACTTCTCATGGTACAGTGCTTGCAAGAGAAAGGTAAGGTGGTTGCATTCATTGGAACAAGGTTCATGACTAGTCATGCTTCAATTCTAAAGGTAGCTGACGTGGGTATAGTTCATGATTCTCTGAGCACCATAGTGGATAGAGATAGTTATGACATATCTATAAAATGTTTCAGTGCATTGAAACCAATTTTGGTGGCTGGCAGAAGTCAATACCACAATATTCAGAAGTTCATTCAACTTCAGATGACATTTACCATATCAGGGCTAGTCATAACTTTGATTACAACAATATGCACTGGAGATTCCCCCCTTGCAGCATTCCAGTTGATTTGGGTGAATGTTTGGATGTGCATGTTGGGTGGCCTAATGATGGTAATGATGTTAACTAGCCAAGAACAGCTTGCCAATCAACCATCTGATCATAGGAACCAACCGATCATAACCAAAAAAATCTGGAAAAAAATTGCTTTTCAGGTTTTATACCAGGCTTCTGTTTCTATGATTCTTGAGTTTTGTGGACATGTTACCGACAAGGAAAGAAAAGTAAGGGAAGCCATGATCTTCAACACATTCCTACTGTGCCAGCTCTCCAATCTGCTCAACACCATGCAGTTGTTGAAAAAGGAAGTTTTTAAGGTGGTTATTCATAGTTTCTGTTTCTTGGGGGCTTTCGGTGGTTGTATTCTTATGCAAGTGCTAGTGATTGAGTATGCCAAAGGCTTAGCAGATTGCATGCAGCTGAATGCTACGAGATGGGGTATCTGTGTCTTCATTGCTGCTCTTTCATGGATATTGGAATGGACCATGAAGAACAGTCGTGGTCCCAGCAATTATGGTTCAGAATCAATTACTTCACCTTCGTTCTATCTTTCTCCAGCTTTTCCATTTCTGATGTTTCTTGTGTTCCCTTTAGGACTAATTTTTAGTCAAATAGGCACCAACATAATAATTCGTTAG 3051 0.4077 MSPATTFSDVGGDGGNIELRATATLLHTRIWPRTRRLFIIIRFLISVKKPTTSRTSPSESYVAVDIEEEKEEEKEEERIISDIARIVKEKDFKSLHEHGGVDHVANVLASIRLQPSEVDINGVHATIPLPVLGTNFSSFLLTSCKCYCFTILMLLISAGLSFAIGFKQEGPKQGWHDGVAIVSAILLLVVGSSLANIWRERKKLKLAKRKDELEFIRKKSDKYLMGDIVLLWPGDKVPADGLLVNGILVLAGPDDPIQSKHDPNGNPFLISGANVIGGQGKMVVASIENKTNLAEIDTFNTEECKRGLLERLIEKPISYIDMAALFISVLVAFVVLIRLIFGKDGNNSGLPEMKGKISISLLMEAFQTVFLRPQGRVSILTGLVTVAILCVQHGMPLVVTISLKCQIDKVEQNQDAVLNDLSACTTMGLVTVVCIDVSGGLVSKPMEVSRIWMGEKDISKVEESEKDQLVLHLLKQGVGLSVLAPEISLSPLYYSLFSWAETTLEMKMRSFTEENFDILELSKLNSSKEGCGVLARKVGDNERDLHLHWSGAASTILEMCSLYYDSAGERHAMENQKIKFEKVIKEMEDSDLEPIAFAYKQTHEEELEQEELILLGMIGLKYTIPTKSALENLRNAGNTQIKLVSEDDIMKVIGIARELGLDHDNLLEGKDLQDLNKKARIDRVDGAHVMGSFSPKDKLLMVQCLQEKGKVVAFIGTRFMTSHASILKVADVGIVHDSLSTIVDRDSYDISIKCFSALKPILVAGRSQYHNIQKFIQLQMTFTISGLVITLITTICTGDSPLAAFQLIWVNVWMCMLGGLMMVMMLTSQEQLANQPSDHRNQPIITKKIWKKIAFQVLYQASVSMILEFCGHVTDKERKVREAMIFNTFLLCQLSNLLNTMQLLKKEVFKVVIHSFCFLGAFGGCILMQVLVIEYAKGLADCMQLNATRWGICVFIAALSWILEWTMKNSRGPSNYGSESITSPSFYLSPAFPFLMFLVFPLGLIFSQIGTNIIIR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02081 1016 Gene3D - 210 286 - -
Cca05g02081 1016 SUPERFAMILY HAD-like 625 736 IPR036412 -
Cca05g02081 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 537 620 IPR023299 GO:0000166
Cca05g02081 1016 Gene3D - 287 446 - -
Cca05g02081 1016 Pfam Cation transporting ATPase, C-terminus 800 968 IPR006068 -
Cca05g02081 1016 Gene3D - 754 973 - -
Cca05g02081 1016 PANTHER CATION-TRANSPORTING ATPASE PLANT 65 974 - -
Cca05g02081 1016 Coils Coil 570 590 - -
Cca05g02081 1016 Gene3D - 447 619 IPR023299 GO:0000166
Cca05g02081 1016 Gene3D - 620 753 IPR023214 -
Cca05g02081 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 149 968 IPR023298 -
Cca05g02081 1016 Pfam E1-E2 ATPase 219 403 - -
Cca05g02081 1016 PANTHER CATION TRANSPORTING ATPASE 65 974 - -
Cca05g02081 1016 SUPERFAMILY Calcium ATPase, transduction domain A 215 296 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02081 Cca-Chr5 40631176 40635338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02081 35 961 Primary Pumps ATPases AT3G63380 33.198 1.26e-135 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02081 K01537 - gmx:102661547 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02081 05 40631176 40635338 Cca05g02081 05 40631176 40635338 ECH