Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02076 ATGGAAGCAAACAGGGAGGAAGCACTTAAAGCGATAGAGATTGCTGAAAAGCGATTTGCTGTAAGAGACTTTGCAGGTGCGAAGAACTATGCTGTAAAGGCTAAAACGCTGTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACATTTGATGTTTACATTGCTTCTGAGGTCAAACATAATGGTGAGCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTAAAGAAACAGTACAAGAAGTTGGCGGTGTTGCTTCACCCGGATAAGAACAAATGTGTGGGAGCTGATGAGGCATTTAAACTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGCACAATTGGGTGGGACTAACCAGACAAATTTGTCTCCTGCTCATGCTACAGGGGCTGCAGGTTATAACAATTCCAATTTGTCAGGCTCTCATGGTAGGCTTGACACCTTTTGGACAATTTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCCTGTAAGAACTGCCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCGGCAAATGGTTCATTTCCATATTGTCCTTGGTCATATGTGCCGGGAAATGGTTATGGAAGTCATTCATTTGATGGAGTTACGTATGTTCCAACTAGTGCGCCCTATTTCAATGGGAATGGGGTCACAGGATACCATTCTGGACATGGGTATGAGTACGTTTCTAATGTTTCATTTCAATGGGGCTCTGCTGGAGTTGTTAATCAAAATGGATCGACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGACATGCGAAGAGGGGAAGACCAAAAGTCAAAACAGGAGCTGATAAGAGGCATCACCTGACAGATGCTATGGTCAATACAAATTCAGATGCACCATTCTCATATGGTGAACCACAGGAAGATAAGCTAAGTAGACCTGACAAGAAACAGAAAGTTGCTGTGGGAGCTAGTTTCAGAAATGGTTATGAAGAAAAGGGATCAAAATGTGCTTCAGAGTCAGTAGTGGCTAATGGAAATGATAGCATGGGACATGGCCAGAAGCTTTCCTGCGCCGTTGAAGTTCAAACCAAACAGTGTTCCATTGCACCCGCATTTGATGCAAGGAAATTATTGATAGAGAAAGCCAGGAAAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTcatcagaagcagcagcagcagccgcaACTCTGAATGAGAAAGAAAAATCACAAGCTGAAGTTGGTAAAGTCAAAAGAGAGACATGCAGAAAAACAGCTCCGAATGTTTCTGGTCTTCGATTAGAGAATGGGAAAGCTGGTCCAATCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTCGATAAAGATAGGTCAGAGGAATGCTTCAAGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCGCGGTTGTATTGTATGATCCGTGAGGTTGTGTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTTAATTCAGATGTTGTTGATCATGTTAACATATTTTCTCATGTTCTAAGTCAGGAGAAGGCTGGTCGCGGTGGTTGTGTCCGCATATATCCAAGAAGCGGGGATATTTGGGCTGTGTATCGAAATTGGTCCCCGGATTGGAACAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCTCTTATTAAGTTGGCTGGATTTAAGACGGTATATCAGAGGAATACAGACAAGAGTGCCATAAAATGGATACCCCGAAGAGAGATGTTGCGCTTTTCTCATCAAGTGCCTTCTTGGTTGCTGAAGGGGGCGGAGACAAACAATTTGCCTGAAAGGTGTTGGGATCTTGATCCGGCTGCGACTCCAGATGAGCTTCTTCATGCTGCTACTGCTACAGAACCAAACTCTTCGTAG 2127 0.4274 MEANREEALKAIEIAEKRFAVRDFAGAKNYAVKAKTLCPGLEGISQMVATFDVYIASEVKHNGELDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNAQLGGTNQTNLSPAHATGAAGYNNSNLSGSHGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYGSHSFDGVTYVPTSAPYFNGNGVTGYHSGHGYEYVSNVSFQWGSAGVVNQNGSTTLPADSVHRANGHAKRGRPKVKTGADKRHHLTDAMVNTNSDAPFSYGEPQEDKLSRPDKKQKVAVGASFRNGYEEKGSKCASESVVANGNDSMGHGQKLSCAVEVQTKQCSIAPAFDARKLLIEKARKEIRKKLEEMKLSSEAAAAAATLNEKEKSQAEVGKVKRETCRKTAPNVSGLRLENGKAGPISITVPDSDFHDFDKDRSEECFKPKQIWALYDEEDGMPRLYCMIREVVSVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAFNSDVVDHVNIFSHVLSQEKAGRGGCVRIYPRSGDIWAVYRNWSPDWNRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQRNTDKSAIKWIPRREMLRFSHQVPSWLLKGAETNNLPERCWDLDPAATPDELLHAATATEPNSS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02076 708 MobiDBLite consensus disorder prediction 312 342 - -
Cca05g02076 708 MobiDBLite consensus disorder prediction 286 305 - -
Cca05g02076 708 Coils Coil 403 423 - -
Cca05g02076 708 Pfam DnaJ domain 66 127 IPR001623 -
Cca05g02076 708 PANTHER BNAC03G44070D PROTEIN 1 700 - -
Cca05g02076 708 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cca05g02076 708 Pfam Domain of unknown function (DUF3444) 469 675 IPR024593 -
Cca05g02076 708 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cca05g02076 708 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca05g02076 708 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca05g02076 708 CDD DnaJ 66 119 IPR001623 -
Cca05g02076 708 PANTHER BNAC03G44070D PROTEIN 1 700 - -
Cca05g02076 708 Gene3D DnaJ domain 55 149 IPR036869 -
Cca05g02076 708 SMART dnaj_3 65 122 IPR001623 -
Cca05g02076 708 SUPERFAMILY Chaperone J-domain 59 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02076 Cca-Chr5 40573811 40577276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02076 4 300 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.960 8.91e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02076 - - gmx:100792639 1318.52