Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02073 atgtcttctactacttcttcttcgtcgtcatcatcaacttcAACCCCATATGACGCTGTTGCTGCTGATGTCCCTGGCCCTAGTACAAGGAGGACCGGTCAATTTGAAGCAGCAGGCCCTTCTTCCTCTCGCCAACGTGCCATGAATGAGGTCTTGCCTGAGCCTATTCTCGAAGCCTTGGCCACACAAGTTGCTGTTGATGCTGCTCAAAACAATGGTCGTCTTTCTGCTGCTTCTGCCCTTGCCATTTTGTTTCAGGTATGTTCCACGTGGCGGGAGGTGTCGCGCTCGGATCTGCTGTGGCAGCGGCTCACAAGACGCATCTGGAGACGCAGCTACAGGTTGCGCGCCACGTGGCAGTTGGAGTTCATATACTGGCATCGGACGGCCAGGAACTTTGCGACAGGGAATCTGTCGTCGAACGTGCCGCAGTTTGATCCGGCGGAGCAGCACCAGAGCCTCATCTGCCGCTGCCTCGCGCTCTCCGACACCCACCTCGCGTGCGGCTTCGTCGACGGCACGGTGCGCCTCTTCGACCTCGAAACCCTCGCCCACGTCAGCACCTACGTCTCGGCCCACGGCCACCTCTTTGGCGCGTTCTCGCGCTCCATCTCGGGCATCGTGATGGTGAACTCGGTCATTACCTTCGCCAGGCTGGACGGTGACGTGTACGTGGACTTCATCAACGGGCCTGGGCCCAGCCAAGCGCGGCGGGCCGTGTCGGGGGACGTGGTGATTAATGGTGTGCTGGTTGGGTTTGCGGGGACTGCCCGGTGGTGGGTGGGCCTCTACGCGGGGATCGCCGACCGGGCTTTTCAGATATGGGACGCGCGGAGCGAGGAGCGCGTGTTCATGAGGGGCTCCTTGACGAACCCGGAAACGGTTATGGGATGGCACATGCTGACAGAGTTGGTTGAGCCCGTGGGCCGCGTGCGCGTTGCGGAGCGGGAGTATGTGGTGGCCTGCACGGGTTCGAGGCTGGTTTGTTTCAATTTTCGGAACCCGGACGTTTTGTTGAGCAACGTGAGGTCCACGGCGGGGTTCGTGGTGGGGTCGCTGGATTCGAGTCACGAGGCCTTCGTGGTGGTGGAGAGGAGCGGCTTGGGAACGGTTCGGCACGCGAGTTCGTTCCAGCGGTTGAGCCGGTTCCGGGTTCGGGGTTCTGTTCAAGGGTTGTTGGGGTGCATGAACCTGGGCTATGTTTTGACCTATTCTCCTGGGCCTGGGCCTGGGCCGGGGCCTTTGTTGAGGGTGTGGGACATTGAGCGCGCGGTGGGACGGTTGTGCGTGACGCTTGGATTTGACGCCGGAGAGGCAAACAGCATGGTGGCGAATGAAAGACATGTGGCCATTTCTGGGAACGACAATTCTATTAACTTATTggattttggtgtacaggatccttag 1407 0.5757 MSSTTSSSSSSSTSTPYDAVAADVPGPSTRRTGQFEAAGPSSSRQRAMNEVLPEPILEALATQVAVDAAQNNGRLSAASALAILFQVCSTWREVSRSDLLWQRLTRRIWRRSYRLRATWQLEFIYWHRTARNFATGNLSSNVPQFDPAEQHQSLICRCLALSDTHLACGFVDGTVRLFDLETLAHVSTYVSAHGHLFGAFSRSISGIVMVNSVITFARLDGDVYVDFINGPGPSQARRAVSGDVVINGVLVGFAGTARWWVGLYAGIADRAFQIWDARSEERVFMRGSLTNPETVMGWHMLTELVEPVGRVRVAEREYVVACTGSRLVCFNFRNPDVLLSNVRSTAGFVVGSLDSSHEAFVVVERSGLGTVRHASSFQRLSRFRVRGSVQGLLGCMNLGYVLTYSPGPGPGPGPLLRVWDIERAVGRLCVTLGFDAGEANSMVANERHVAISGNDNSINLLDFGVQDP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02073 468 Gene3D - 41 131 - -
Cca05g02073 468 MobiDBLite consensus disorder prediction 1 46 - -
Cca05g02073 468 Gene3D - 132 285 IPR015943 GO:0005515
Cca05g02073 468 SUPERFAMILY F-box domain 74 128 IPR036047 GO:0005515
Cca05g02073 468 SUPERFAMILY WD40 repeat-like 113 460 IPR036322 GO:0005515
Cca05g02073 468 PANTHER WD40 REPEAT PROTEIN 12, 37 1 466 - -
Cca05g02073 468 PANTHER TRANSCRIPTIONAL REGULATOR STERILE APETALA 1 466 - -
Cca05g02073 468 MobiDBLite consensus disorder prediction 1 18 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Cca05g02073 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02073 - - gmx:100807240 712.605