Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02065 ATGCAATCCAAATCTGAAACCGAAAATCAGCTGAAGTCCAATTCACATTCCTTTACACCTAACAATGCTTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATCCTGTCCCCCAAGCAATGTTGGGAGTGAATGCATCTAATTCGTCTTCACTTGAACGCCTTAATGGTGATTCAGAATCCAGTGAAGATCGATCTTTGTCCAATAATGGGTTGAATGAGGAAGATGATAATGCCACTAAAGAATCACAACCCACTGCTCCTAGAAAATCAGGGAATTATGGACAAGACCATCAAGCGATGCAGCATTCTTCATCACCTGCACCTTCTGTGCATGATGATTACCTTACAGAGGCTCCACAACTGGATCTTGTTGGCCATTCAATTGTTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAAGCTCGTGCTAAAGCAGAACTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCACGCGGTAATGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAACAAGGAAAATGATAAGGGTTCTGATCCAGTTCCATCATCACAGTCAATTAATTCATCTGGTTTTGAACCATTACCCTCTGATTGTGCTGAGACCTGGAATTCTAATGTGCAACAAGATGCCAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACACAACTATGCAGATGGTAGAGGCTCCTACCATAATCATAATGCTTTGCAGTCATCATCTGCTTTTAGTTTGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGCCAACAAAGGGGAAGCATCTCATCTGAGCACACTTCTCAGAGGCGTCTTGCTATTCAGTAA 984 0.4278 MQSKSETENQLKSNSHSFTPNNAYSEPWWRGIQYNPVPQAMLGVNASNSSSLERLNGDSESSEDRSLSNNGLNEEDDNATKESQPTAPRKSGNYGQDHQAMQHSSSPAPSVHDDYLTEAPQLDLVGHSIVGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHMNKENDKGSDPVPSSQSINSSGFEPLPSDCAETWNSNVQQDARGSQVHERFEEHNYADGRGSYHNHNALQSSSAFSLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02065 327 MobiDBLite consensus disorder prediction 282 296 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 226 250 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 69 83 - -
Cca05g02065 327 ProSiteProfiles NF-YA/HAP2 family profile. 150 210 IPR001289 GO:0003700|GO:0006355
Cca05g02065 327 MobiDBLite consensus disorder prediction 48 114 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 1 28 - -
Cca05g02065 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 152 207 IPR001289 GO:0003700|GO:0006355
Cca05g02065 327 MobiDBLite consensus disorder prediction 216 250 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 308 327 - -
Cca05g02065 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 318 IPR001289 GO:0003700|GO:0006355
Cca05g02065 327 ProSitePatterns NF-YA/HAP2 subunit signature. 155 175 IPR018362 GO:0003677|GO:0016602
Cca05g02065 327 MobiDBLite consensus disorder prediction 84 111 - -
Cca05g02065 327 SMART cbf3 149 210 IPR001289 GO:0003700|GO:0006355
Cca05g02065 327 Gene3D - 150 212 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 275 327 - -
Cca05g02065 327 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 30 318 - -
Cca05g02065 327 MobiDBLite consensus disorder prediction 48 68 - -
Cca05g02065 327 PRINTS CCAAT-binding transcription factor subunit B signature 153 175 IPR001289 GO:0003700|GO:0006355
Cca05g02065 327 PRINTS CCAAT-binding transcription factor subunit B signature 184 207 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02065 Cca-Chr5 40399159 40403084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02065 1 254 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.831 8.07e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca05g02065 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02065 K08064 - gmx:102664020 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00760 01 10042129 10046570 Cca05g02065 05 40399159 40403084 PCT