Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02055 atgaacatgaacatgaacatgaacatgaacatgaacGATTCTACATACAAAGTTGAAACTACATGTCGTCTTGCTCAATGGACAATCCACAACTTACCCTCTTCCACCTACCGCAAATCCGATCCCTTCAAGATAGCCACGTGGAATTGGCATTTGTCGGTGGAGAAGAACCGGGTTTCCTTATACCCCGAACTATACAGACACAATCCCCCCATCGCATCTTTCATCCTTCGTTTGCTTACCTCTCTTCCAGATCGCAAACCTTTCGCCCGTTCAGAAATAAAAGACAAACTACTTGCCAACACCGAAGGCTTTGTTTGGATACTTGAGGCTCCCCTACCTGCCAAATTCATTATTCACGTTGAGTTCTTGGATTTGAAGACTGCAACTCCAAACGGTGGAGAACCTTGTTCTATCTGGCCTAGCAGATTTTTGCAGCAAAACTCAAATGCAGAAGCTCTTAATTCTCTTGGTCTTATGCTAACCCAAGACATTCTCACAGACATAACAATCAATACCAACGAGTCTGACGAAAGCATAAGAGCTCACCGAGCTGTACTTGCATCTCGTTCACCAGTATTCCGCAGCATGTTCTCACATAAGCTTAAGGAGAATCATCTTTCCACCATAAACATCTCAGACATGTCAATGGAAGCATGCCAAGCACTTCTAAGTTACCTCTATGGAACCATCAAAGATGAAGAGTTTCTCATGCATAGGCTTGCTCTACTGCATGCTGCTGACAAGTATGACATATATGACTTGAGAGAGGCATGTCATGAGAGTCTGCTAGAAGATATTGATTCAAATAATGTGCTTGAGAGGCTCCAAAGTGCTTATCTGTATCAATTGCCGAAGCTCAAGAGTAGTTGTATGGAATATCTCGTGAAATTTGGTAAACTATTTGACATTAGGGATGATTTCTTTTGCTTCTTGCAAAGTGCAGACAGGGATCTGATTTCTGAAGTCTTTCATGAAGTTCTTAATGTCTGGACAGGATTCTGA 1005 0.409 MNMNMNMNMNMNDSTYKVETTCRLAQWTIHNLPSSTYRKSDPFKIATWNWHLSVEKNRVSLYPELYRHNPPIASFILRLLTSLPDRKPFARSEIKDKLLANTEGFVWILEAPLPAKFIIHVEFLDLKTATPNGGEPCSIWPSRFLQQNSNAEALNSLGLMLTQDILTDITINTNESDESIRAHRAVLASRSPVFRSMFSHKLKENHLSTINISDMSMEACQALLSYLYGTIKDEEFLMHRLALLHAADKYDIYDLREACHESLLEDIDSNNVLERLQSAYLYQLPKLKSSCMEYLVKFGKLFDIRDDFFCFLQSADRDLISEVFHEVLNVWTGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02055 334 Pfam BTB/POZ domain 161 265 IPR000210 GO:0005515
Cca05g02055 334 SMART BTB_4 167 267 IPR000210 GO:0005515
Cca05g02055 334 CDD BTB_POZ_ZBTB_KLHL-like 166 250 - -
Cca05g02055 334 SUPERFAMILY POZ domain 150 265 IPR011333 -
Cca05g02055 334 PANTHER OS08G0495500 PROTEIN-RELATED 11 334 IPR044714 -
Cca05g02055 334 PANTHER OS08G0495500 PROTEIN 11 334 - -
Cca05g02055 334 Gene3D Potassium Channel Kv1.1; Chain A 143 297 IPR011333 -
Cca05g02055 334 ProSiteProfiles BTB domain profile. 167 228 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02055 Cca-Chr5 40314573 40315951 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca05g02055 BTB 1.4e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02055 K10523 - gmx:100790186 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02055 05 40314573 40315951 Cca05g02055 05 40314573 40315951 ECH