Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02054 ATGCCCTTAGGTACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCAGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTCGGACAAGTGGGAAATGTGGGGGTAAACCAGAAAAATTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGGAAAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGTCGTAGTAAATAG 429 0.4499 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGKRSRKRNKYSDNLILRRRSK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02054 142 Pfam Ribosomal Proteins L2, C-terminal domain 1 117 IPR022669 GO:0003735|GO:0005840|GO:0006412
Cca05g02054 142 SMART Ribosomal_L2_C_2 1 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Cca05g02054 142 Gene3D Ribosomal protein L2, domain 3 63 141 IPR014726 -
Cca05g02054 142 MobiDBLite consensus disorder prediction 126 142 - -
Cca05g02054 142 Gene3D - 1 62 IPR014722 -
Cca05g02054 142 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Cca05g02054 142 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 1 139 - -
Cca05g02054 142 TIGRFAM rplB_bact: ribosomal protein uL2 1 141 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Cca05g02054 142 MobiDBLite consensus disorder prediction 90 142 - -
Cca05g02054 142 PANTHER RIBOSOMAL PROTEIN L2 1 139 IPR002171 GO:0003735|GO:0005840|GO:0006412
Cca05g02054 142 SUPERFAMILY Translation proteins SH3-like domain 1 139 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02054 Cca-Chr5 40302182 40302610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02054 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.643 9.76e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02054 K02886 - cpap:5878356 276.559