Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02052 ATGCTAGCATCTGTTGCAGAACATGGCATATCAAAACCATCAAGAAATCATCAAAATTCTCACCATTCAGAAGCACCAAATTCCTATGCAAACACAAGGGCAATACTTGGCCAACCTCGACTTCAAAGGACTAAACCAATTATATGGTGTGCTGCAATTTTGTGCTTCATATTCAGCTTAGTACTTATTTTCTTTGGAATTGCAACATTGATTGTCTACCTTGCCATGAAGCCACGAAACCCCATGTTTGACATTCCTAATGCAAACCTCAATGTAGTATATTTTGACTCACCACAGTACCTCAATGGTGAATTCACTCTCCTTGCAAATTTTTCCAATCCTAACAGGAGAATTGGGGTGAGGTTTGAGTCCTTGAATATTGAGCTTTTCTACTCGAACAGACTCGTGTCATCACAGACAATCAAGCCTTTTACTCAAAGGCCAAGGGAAAACAGGTTGCAATCAGTGAACTTGATATCCAGCTTGGTGTTTTTGCCTCAAGATGTTGGTGTGAAACTTCAAAGGCAAGTGGAGAATAACAGGGTCAACTACAATGCAAGGGGAACATTTAAGGTGAGGTTCAACATGGGCCTTTTCCATTTATCTTACTGGCTGCATAGCATATGTCAGATAGAGATGACTAGTCCTCCAACTGGTATTCTAGTAGCAAGACAATGTATAACAAACAGATGA 693 0.4012 MLASVAEHGISKPSRNHQNSHHSEAPNSYANTRAILGQPRLQRTKPIIWCAAILCFIFSLVLIFFGIATLIVYLAMKPRNPMFDIPNANLNVVYFDSPQYLNGEFTLLANFSNPNRRIGVRFESLNIELFYSNRLVSSQTIKPFTQRPRENRLQSVNLISSLVFLPQDVGVKLQRQVENNRVNYNARGTFKVRFNMGLFHLSYWLHSICQIEMTSPPTGILVARQCITNR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02052 230 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 17 230 - -
Cca05g02052 230 Pfam Late embryogenesis abundant protein 112 202 IPR004864 -
Cca05g02052 230 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 17 230 - -
Cca05g02052 230 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02052 Cca-Chr5 40283119 40284237 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02052 - - pvu:PHAVU_008G282100g 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02052 05 40283119 40284237 Cca05g02052 05 40283119 40284237 ECH
Cca09g01257 09 34980047 34980829 Cca05g02052 05 40283119 40284237 PCT