Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02050 ATGGGAACTAAATCGGTTGTGGATTTAATGGAGTCTACATCCGAGGTTCATTTTTCTGGATTTCACATGGATGGCTTAGAGCGAAGAAAGTCTGGCACCGATCAACCAACCACTTCAGCAACTGACGTGTATAAACAACCTTTTGTCATAGGTGTTGCTGGTGGATCAGCATCCGGTAAGACATCAGTTTGTGATATGATTATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTTCAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAATTGCTACGCGTCATGGACAAGTTGAAGCGTGGCCAAGCAGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAGAGTGATGTTTTTCCAGCAAGACGGGTAAACCCAGCGGATGTTATAATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTGCGGGCATTGATGAATATGAAGATATTTGTCGACACAGATGCTGATGTTCGTCTGGCTAGAAGAATTAAGCGTGATACTGCTGACAATGCTCGTGATATTGGAACTGTGCTAGATCAGTATTCTAAATATGTGAAGCCGGCTTTTGACGACTTTATTCTTCCCACCAAGAAATATGCTGATATCATTATACCCCGTGGAGGAGATAATCACGTGGCAATTGATTTGATTGTACAGCATATTCGCACGAAGCTTGGTCAACATGACTTGTGTAAAATATATCCTAACTTATATGTCATTCAATCTACTTTTCAGATACGGGGTATGCATACCCTGGTACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCAGACCGTTTAATTCGTTTGGTTGTAGAACACGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACTTCAACTGGATCGGTGTATAGTGGTGTGGACTTCTGTAAGAGGTTGTGTGGCGTCTCCATCATTCGAAGCGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCCAGTGATATCTCAGAAAGGCATGTATTACTGTTGGATCCTATCTTAGGAACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTTTAAAGAAGGGGGTCCCAGAGTCTAACATTATATTTCTCAATCTCATATCAGCACCTCAAGGAGTTCATGTGGTCTGCAAAAGCTTTCCCAGAATAAAAATCGTGACATCTGAGATTGACATCGGATTGAATGACGATTTCCGTGTCGTACCAGGCATGGGCGAGTTTGGGGATAGGTACTTTGGAACGGACGATGATGACCAGCAGGTGGTGACCCCTTCAAAGTAG 1437 0.4141 MGTKSVVDLMESTSEVHFSGFHMDGLERRKSGTDQPTTSATDVYKQPFVIGVAGGSASGKTSVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELSRVQDYNFDHPEAFDTEQLLRVMDKLKRGQAVDIPKYDFKGYKSDVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLARRIKRDTADNARDIGTVLDQYSKYVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLVRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTSTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISERHVLLLDPILGTGNSAVQAISLLLKKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNDDFRVVPGMGEFGDRYFGTDDDDQQVVTPSK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02050 478 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Cca05g02050 478 PANTHER URIDINE KINASE 15 469 - -
Cca05g02050 478 Gene3D - 43 250 IPR027417 -
Cca05g02050 478 PANTHER URIDINE KINASE 15 469 - -
Cca05g02050 478 CDD PRTases_typeI 324 439 IPR000836 -
Cca05g02050 478 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Cca05g02050 478 Pfam Uracil phosphoribosyltransferase 265 466 - -
Cca05g02050 478 CDD UMPK 49 247 IPR000764 -
Cca05g02050 478 Gene3D - 251 466 IPR029057 -
Cca05g02050 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 240 IPR027417 -
Cca05g02050 478 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
Cca05g02050 478 PRINTS Uridine kinase signature 47 64 - -
Cca05g02050 478 PRINTS Uridine kinase signature 77 88 - -
Cca05g02050 478 PRINTS Uridine kinase signature 122 137 - -
Cca05g02050 478 PRINTS Uridine kinase signature 179 189 - -
Cca05g02050 478 PRINTS Uridine kinase signature 193 204 - -
Cca05g02050 478 PRINTS Uridine kinase signature 215 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02050 Cca-Chr5 40272548 40278968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02050 1 469 PRT Gene Family AT4G26510 84.355 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02050 K00876 - gmx:100798205 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02050 05 40272548 40278968 Cca05g02050 05 40272548 40278968 ECH
Cca09g01255 09 34931616 34939391 Cca05g02050 05 40272548 40278968 PCT