Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02049 ATGAGGAACAGGGTCAGGTTCCACTGCGGGCTCGCCCCAGCCACGACGACGATGATTTCCGGCCACCGTATCTCAAACTCAACAACTCGTCGGAGCTCAACCCGCTGCCACCACTCCCGCGTCACAAATGTAGCCTTCTTCCTCCTCCACCGCCGCCGCCGCCCACGACAAGGCCTTCGGATCGGACAGCCTCCGCCTCTTCCCGCCCTCCGACGCCACCGAAACGAAACCCCCCGCGACGGCGGAGGGAGCGCGGCGGCATCATTCCCTAACCCAAACGAAGACGCTGTGAACGCGGTGGTGGCAGCGTTCAAGGGTATCGTGTTGACGAGTTCCGCGGACGGGACGGTGAAGATGTGGAGGAGGCAAATCGAGGAGAATGGCGAGAAGCCGAAGCACGTGTTCGATAGTGTTTTGTTGAAGCAAGAGAACGCCGTGACGGCGCTTGCGGTGAACCGTTCGGCGGCGGTGGTATACTGCGGTTCCTCCGACGGATCCGATTCGCAGAGAAAGATGCCACAGGAGAGTTTATCAAACTCGTTTTTTGTATCTCCTCACAAGAGAGGGTTGAGTTTGAAAGGTTCGGTTTGTAACAACAATGAGGCTTCCTTCACTGTGACTGAGGATAGCATCAACGATCATGAATTGGCTCAGAGGAAAGCAGAGGAAGCAGCTTCAAGGAGATACGAAGCAGCAGAATGGCTTCGGCAAATGGACAATGGCGCGTCTTCATCGCTCGCGAAAGAACCCTCCGAGGAGGAATTCTGTCTCGCACTTCGCAACGGTCTCATTCTCTGCAACGTCCTCAACAGAGTCAACCCCGGCGCTGTCGTCAAGGTTGTCGACAACGACAACCTCGCCGTTCAGTCTGCAGAGGGACCCGCTCAGTCCGCAATTCAGTACTTTGAGAACATGCGGAACTTTCTTGAGGCCGTCAAAGACATGAAGCTTTTGACCTTCGAAGCTTCCGATTTGGAAAAGGGGGGTTCGTCGAGCAAAGTTGTGGACTGCATTCTCTGTTTGAAAGGGTATTATGAATGGAAGCTGTCAGGTGGAGTTGGGGTGTGGAGGTATGGTGGAACTGTCAGGATTACTTCCTTCCCCAAATGGTCTCCTTCCTCCATAATGGGTAATGAGAATGCTGATGAGTATGAGTCATCACAGTATGAACAACTGCTTCAGCTTCTTCGTGCATCTGGCGAGGTTTCAACTGAGGAAACCACAACTGCTAATGCTTTGACTTCGCTTTTTGATCACTTTGGACTCAAACTTCTCCTGGCTTACCTCAGAGAGGCTGATGGGGTTGAAGATCTGCCGCTGAATTCAATGGTAATTGATACTTTTCTCAGGAAGGTTGTCAAGGATTTTTCTGCATTGCTTGATTCTCAAGGCACTCAGCTTGGACTTTTCCTCAAGAAAATATTGAAAGGCGATACTGGTTGCCTCTCTAAGAGAGAATTCATAAAAGCTATCACATCATATCTTAATCAAAGACGTAGTTTGGCATCAAACGAATCCTCTAAACTATGCACTTGTGGTGGAAAACGTGATAGTAATCAGCAAAATGTCAATTATTCTGCCAGGCATGCTGAGATAATTGATGGCCTGCAAAAACAACTTGAGCGATTGAAGTATTTCTATGAAGAGATAAAATTGGAGGTCAAACAAATTCAATCTAAGTGGGACCAAGAATTGAGCAGGCTGGAGAATCATATAAAGAGCCTTGAAGATGCCTCCTCTTCCTACCACAAAGTCCTGGAAGAGAATCGCTTTCTTTACAATCAAGTCCAAGACCTCAAAGGAGCCATTAGGGTCTACTGTAGAGTGAGGGCCTTCCTATCAGGACAATCAAATGAACAATCTACAGTAGATTATATTGGAGAAAATGGAAACATAATGATTATGAATCCCCTTAAGCAAGGAAAAGATGCTAGAAGGGTGTTTTCATTCAATAAAGTGTTTGGAACAAGTGCCACCCAAGAACAAATATATGCCGACACTCAACCAATGGTTAGGTCTGTCTTAGATGGCTATAATGTATGCATCTTTGCATATGGGCAGACTGGGTCAGGAAAAACGTACACAATGAGTGGCCCTGATCTGATGACTGAAGAGACGTGGGGTGTAAACTATAGGGCTTTGCGCGACTTATTTCATATTTCAAAGGAAAGAGCAGATGCCATAAAATATGAAGTTGGCGTCCAGATGATTGAAATATATAATGAACAAGTGAGAGATTTATTAGTCAGCGATGGCTCTAACAGAAGATTAGATATACGAAACAATTCTCAATTGAATGGTCTTAACGTGCCTGATGCATCTTTAGTTCCGGTTAATTGCACTCAAGATGTTCTTGATTTAATGAGAATTGGTCAGAAGAATCGTGCTGTTGGTGCTACAGCTCTTAATGAGCGAAGCAGCCGTTCTCATAGTGTGTTGACAGTTCATGTTAGAGGGAGGGACTTAGAGTCTAACTCCATTCTTAAAGGCTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAGAGAGTGGACAAATCTGAGGCGGTTGGTGAGAGACTAAAGGAGGCCCAGCATATAAATAAATCTCTTTCTGCACTTGGGGATGTTATCTCTGCTTTGGCACAGAAGAGTCCACATATTCCTTATAGAAATAGCAAGCTCACACAAGTTCTACAAGATTCATTAGGTGGCCATGCAAAAACCTTGATGTTTGTTCATATAAATCCTGAACTCAATGCTCTTGGAGAGACAATTAGCACACTTAAGTTTGCGGAGAGGGTTGCAACCATTGAACTTGGGGCTGCCCAAACCAATAAAGAAACTGGTGAAATCCGGGACCTAAAGGAAGAGATATCAAATATCAAATTGGCATTAGAGAGGAAGGAAACTGAACTACAACAATGGAAAGCTGGGAATGCACGAAATGCCATAGAATCTCAGAAAGCACCAAGAGCTGTTTCACCTTTTCGTTTGCCCAAAAATGTTACCAGTGACAGCATGAAGCCTGAAAATTGTCAAAGACCCATGGATGACAGAAGCTCTGAGGCTAAAACTTGTTCTTCGGGTAAGCAAAGAAGGTCAAGATTTCCCTCAACATTTATAGAGAAGGACTCCATGCCAAAAATGTCTCTTGTAGCTGAAGAAAAAATAGTGAGCTCAGGGAAAGGTAGATCACCATCACCTCCAGTCAAGAGGAGATCAATATCCACTGATAGAGGGTCTGTCATTAAAAGCAAGGTCAAAAGCGACACAACAGACAGCCAACCAATATTAAAGCATCTATTTCCAACTAGAGTACTAGTAAATAAATCTCTAGTCACAATGCCAATGGTCTCATCCACAGACAATAACTCAAGGGTGAATCTGCATTCACATGAGCAAGTGAAACAGAACACTTCTGAAACTCTCTGCAACCTCCAGAAGGTAAACTCCAGGAAAGCCCATCAAGAACATGAAGAGGAACAATTCAAACAAGTTGCAGTAAGACAAGGTGGTACTAGGAAAAACAAGGCTGACAGTAAGGCCAAGGTTAAGCATCATCAACAATTGCCCTTCAGGATTCAAAAGCCTGATATGATACCTATTTGTGACATGGATATTGGCCGTGAAATGACCATGGAGGCACCTCGAAAGAACGATTTCTTTGAGCCAGAAAATGATGTAAGCTTCATGGAGTCTGCAGTCAATGGTGTTGTAAATGTTAAAAAGATACATCAGAACATATCTAGGAATTCTCAGAACATTGGATCAAGAGGAATAGTGCAAGCAGCTGAGCCTTTATTGTCCAGCAAAGTTGAAAACAGAATTTTACATGGTTCAGGTCGCAATCTTAAGGAAGGCATCAATACTACTTTGCCTGAATCTAGAAGGAGCCGATCTACGCCACGTGGAAAGTTTTTTGTTTTATCTTGA 3912 0.4494 MRNRVRFHCGLAPATTTMISGHRISNSTTRRSSTRCHHSRVTNVAFFLLHRRRRPRQGLRIGQPPPLPALRRHRNETPRDGGGSAAASFPNPNEDAVNAVVAAFKGIVLTSSADGTVKMWRRQIEENGEKPKHVFDSVLLKQENAVTALAVNRSAAVVYCGSSDGSDSQRKMPQESLSNSFFVSPHKRGLSLKGSVCNNNEASFTVTEDSINDHELAQRKAEEAASRRYEAAEWLRQMDNGASSSLAKEPSEEEFCLALRNGLILCNVLNRVNPGAVVKVVDNDNLAVQSAEGPAQSAIQYFENMRNFLEAVKDMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKWSPSSIMGNENADEYESSQYEQLLQLLRASGEVSTEETTTANALTSLFDHFGLKLLLAYLREADGVEDLPLNSMVIDTFLRKVVKDFSALLDSQGTQLGLFLKKILKGDTGCLSKREFIKAITSYLNQRRSLASNESSKLCTCGGKRDSNQQNVNYSARHAEIIDGLQKQLERLKYFYEEIKLEVKQIQSKWDQELSRLENHIKSLEDASSSYHKVLEENRFLYNQVQDLKGAIRVYCRVRAFLSGQSNEQSTVDYIGENGNIMIMNPLKQGKDARRVFSFNKVFGTSATQEQIYADTQPMVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERADAIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNVPDASLVPVNCTQDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRDLESNSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINKSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNALGETISTLKFAERVATIELGAAQTNKETGEIRDLKEEISNIKLALERKETELQQWKAGNARNAIESQKAPRAVSPFRLPKNVTSDSMKPENCQRPMDDRSSEAKTCSSGKQRRSRFPSTFIEKDSMPKMSLVAEEKIVSSGKGRSPSPPVKRRSISTDRGSVIKSKVKSDTTDSQPILKHLFPTRVLVNKSLVTMPMVSSTDNNSRVNLHSHEQVKQNTSETLCNLQKVNSRKAHQEHEEEQFKQVAVRQGGTRKNKADSKAKVKHHQQLPFRIQKPDMIPICDMDIGREMTMEAPRKNDFFEPENDVSFMESAVNGVVNVKKIHQNISRNSQNIGSRGIVQAAEPLLSSKVENRILHGSGRNLKEGINTTLPESRRSRSTPRGKFFVLS 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02049 1303 Gene3D - 217 346 IPR036872 -
Cca05g02049 1303 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 190 1298 - -
Cca05g02049 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 967 IPR027417 -
Cca05g02049 1303 MobiDBLite consensus disorder prediction 1004 1022 - -
Cca05g02049 1303 MobiDBLite consensus disorder prediction 990 1029 - -
Cca05g02049 1303 Pfam Calponin homology (CH) domain 226 346 IPR001715 GO:0005515
Cca05g02049 1303 PRINTS Kinesin heavy chain signature 800 817 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 PRINTS Kinesin heavy chain signature 831 849 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 PRINTS Kinesin heavy chain signature 677 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 PRINTS Kinesin heavy chain signature 880 901 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 SMART ch_5 227 344 IPR001715 GO:0005515
Cca05g02049 1303 SUPERFAMILY BAR/IMD domain-like 516 599 IPR027267 -
Cca05g02049 1303 CDD KISc_C_terminal 600 932 - -
Cca05g02049 1303 SUPERFAMILY Calponin-homology domain, CH-domain 221 366 IPR036872 -
Cca05g02049 1303 SMART kinesin_4 600 938 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 Coils Coil 533 553 - -
Cca05g02049 1303 Coils Coil 944 964 - -
Cca05g02049 1303 Coils Coil 558 578 - -
Cca05g02049 1303 Gene3D Kinesin motor domain 544 932 IPR036961 -
Cca05g02049 1303 MobiDBLite consensus disorder prediction 55 91 - -
Cca05g02049 1303 MobiDBLite consensus disorder prediction 1145 1181 - -
Cca05g02049 1303 Pfam Kinesin motor domain 608 930 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 ProSiteProfiles Kinesin motor domain profile. 602 930 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g02049 1303 Gene3D - 72 166 IPR015943 GO:0005515
Cca05g02049 1303 ProSiteProfiles Calponin homology (CH) domain profile. 225 346 IPR001715 GO:0005515
Cca05g02049 1303 PANTHER KINESIN-LIKE PROTEIN KLP-3 190 1298 - -
Cca05g02049 1303 MobiDBLite consensus disorder prediction 1050 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02049 Cca-Chr5 40250324 40265078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02049 593 930 Calmodulin-binding Proteins AT5G65930 43.605 1.67e-76 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02049 K10406 - gmx:100811516 1946.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02049 05 40250324 40265078 Cca05g02049 05 40250324 40265078 ECH
Cca09g01254 09 34863606 34874749 Cca05g02049 05 40250324 40265078 PCT