Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02047 ATGTATAGGATTTCCCCCTCTACAATCCCAAAACAGATCACCACTTCTCTTCTCTCAGCAAGGTCTGTAAACTTTAGGAACATGTCACTTTCTACCAAAATCTTCTCCCTCACCTTGCTTCTCTTATTAAACTCTCTTTTGTTTCCATGCTGTTACTCCCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAGAACAGTCTAGACAATACTGCAGATGCATTAGCATCTTGGAACCCTTCCAACCCAACCCCATGCAATTGGTTTGGTGTGCACTGCAACTTACAAGGAGAGGTGGTTGAGATAAACCTGAAGTCAGTGAACTTACAAGGCTCACTGCCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGACTCTTGTCCTGTCATCAAGCAACATCACAGGCAGGATTCCAAAGGAAATTGGAGACTATAAAGAGCTCAATGTCATTGATCTCAGTGGCAATTCTCTCTTGGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACCTTAGCTCTGCATGCCAACTTTCTCGAAGGCAGCATTCCATCCAACATAGGAAATCTATCAATTCTTGTGAATTTGACACTCTATGACAACAAACTGAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAACTGAGCTCCAAGTGTTGAGAGCAGGAGGGAACACAAACCTTAAGGGTGAGGTACCATGGGAAATTGGAAACTGCTCCAATTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTATTCCTTCTTCAATAGGAATGCTGAAAAGAATTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATCCCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTACCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAGTCTTCTCTTATGGCAAAACAATATAGTAGGTACTATCCCAGAAGAGCTTGGAAGCTGCACTCAACTTGAAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGAATACCAACCAGTTTTGGAAAGCTATCAAATTTGCAAGGGCTTCAACTGAGTGTCAATAAGCTTTCAGGCATCATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAGGTTGACAACAATGCTATTTCAGGGGAGATCCCGCTTCTTATTGGCAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTCATAGGAGAAATCCCAGATAGTCTTTCACAGTGCCAAGACCTTCAGGCACTTGATCTTTCTTACAACAATTTGACTGGTCCAATACCCAAACAACTTTTTGGGTTGAGGAACCTCACTAAACTGCTGCTTCTTTCTAATGACTTGTCAGGCTTTATACCACCTGAGATAGGTAACTGCACAAGTCTCTACAGGTTGAGGTTAAATCACAATAGACTGGCAGGTACCATTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTCTTGGATATGAGCAGCAATCACCTTGTAGGGGAGATTCCTCCAACACTATCCAAATGCCAAAATCTTAAGTTTCTGGACCTCCATTCAAATAGTCTCACTGGTTCTGTTCCAGATCATCTGCCCAAAAACCTGCAGTTAATAGATCTCTCAGACAACAGGCTAATAGGTGAACTGAGTCATTCCATTGGCTCATTAACTGAATTAACCAAACTCAACTTGGGAAAGAATCAACTCAGTGGAAGCATCCCTGAAGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCACTAGAAATATTTCTCAATCTTAGTTGTAACCAGTTTTTTGGTGAAATCCCACCCCAGTTCTCCAGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCATAACAAGCTCTCAGGAAACTTGGATGCTCTCTCTAACCTTCAGAACCTTGTTTCGTTAAATGTTTCCTTCAATGAGTTCTTTGGAGAATTGCCTAACACTCCATTCTTCAGGAAACTCCCTCTCAGTGATCTCACAGGAAATGATGGTCTCTACATTGTTGGTAGTGTTGAAACTCCAGCTGCAAGATTGGAAGCCAAGGGTCATGCCAAATTGGCTTCGAAGATTATAGTGTCCATTCTCTTAGGCACCAGTGCAGTACTAGTACTGCTCACAATCCATGTCTTGATCCGTGCTCATGTTGCTAACAAAGCACTCATGGAGAATAACAGTTGGGCGATGACTTTGTATCAGAAGTTTGAATTCTCCATTGATGACATTGTCCGGAATTTGACATCATCCAATGTGATTGGCACTGGAAGCTCAGGAGTTGTGTATAAGGTCACAGTTCCAAGTGGCCAAACACTAGCAGTTAAAAAGATGTGGTCATCTGCAGAGTCCGAAGCATTTACTTCTGAAATTCAAGCACTAAGTTCAATTAGACACAAGAACATCATCAAGCTTCTAGGTTGGGGATCCAGCAAGAACATGAAGCTACTGTTTTATGACTACCTCCCTAATGGAAGCTTGAGCTCATTACTTCATGGTTCAGGAAAGGGAAAACCAGAATGGGAGACCAGATATGATGTTATATTAGGAGTGGCTCATGCACTTGCATATTTGCACCATGATTGTGTGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAATGTGTTGTTAGGTCCTGGCTATCAACCTTTCCTTGCTGACTTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTGTACTCATCCCAAGCCAGTCCAAAGACCCTACCTTGCTGGCTCCTATGGATATATGGCTCCAGAACATGCATCTatgcagcagatcagtgagaagagtgatgtgtacagttttggtgtggtcctacttgaggtcctaacaggaaggcaccccctagatccaacactccctgggggtgcacacttggttcaatgggTTAGGAACCACTTAGCTAGCAAAGGAGACCCATCTGAGATTCTTGACACAAAGCTGAGAGGGAGAACTGATTCTACTATGCATGAAATGCTACAAACTCTAGCCGTGTCATTTCTATGTGTCAGCACCAGAGTTGAGGATCGTCCAACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTCGACCTGTTGAGGCCTCAACCACAGGCTCTGATGTGTTAAAGGGAGTTTTAACAGTGCATGCTTCTTTACCACCTCCTAATTAA 3282 0.4126 MYRISPSTIPKQITTSLLSARSVNFRNMSLSTKIFSLTLLLLLNSLLFPCCYSLNEQGQALLAWKNSLDNTADALASWNPSNPTPCNWFGVHCNLQGEVVEINLKSVNLQGSLPSNFQPLRSLKTLVLSSSNITGRIPKEIGDYKELNVIDLSGNSLLGEIPEEICRLSKLQTLALHANFLEGSIPSNIGNLSILVNLTLYDNKLSGEIPKSIGSLTELQVLRAGGNTNLKGEVPWEIGNCSNLVVLGLAETSISGSIPSSIGMLKRIQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLQSLLLWQNNIVGTIPEELGSCTQLEVIDLSENLLTGRIPTSFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPLLIGNLRSLTLFFAWQNKLIGEIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLAGTIPSEITNLKNLNFLDMSSNHLVGEIPPTLSKCQNLKFLDLHSNSLTGSVPDHLPKNLQLIDLSDNRLIGELSHSIGSLTELTKLNLGKNQLSGSIPEEILSCSKLQLLDLGSNSFSGEIPKEVAQIPSLEIFLNLSCNQFFGEIPPQFSSLRKLGVLDLSHNKLSGNLDALSNLQNLVSLNVSFNEFFGELPNTPFFRKLPLSDLTGNDGLYIVGSVETPAARLEAKGHAKLASKIIVSILLGTSAVLVLLTIHVLIRAHVANKALMENNSWAMTLYQKFEFSIDDIVRNLTSSNVIGTGSSGVVYKVTVPSGQTLAVKKMWSSAESEAFTSEIQALSSIRHKNIIKLLGWGSSKNMKLLFYDYLPNGSLSSLLHGSGKGKPEWETRYDVILGVAHALAYLHHDCVPSILHGDVKAMNVLLGPGYQPFLADFGLARIASENGDCTHPKPVQRPYLAGSYGYMAPEHASMQQISEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPSEILDTKLRGRTDSTMHEMLQTLAVSFLCVSTRVEDRPTMKDTVAMLKEIRPVEASTTGSDVLKGVLTVHASLPPPN 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02047 1093 Pfam Protein kinase domain 791 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02047 1093 SMART LRR_typ_2 313 337 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 457 481 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 361 385 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 505 529 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 648 671 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 120 144 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 168 192 IPR003591 -
Cca05g02047 1093 SMART LRR_typ_2 575 599 IPR003591 -
Cca05g02047 1093 SUPERFAMILY Protein kinase-like (PK-like) 776 1063 IPR011009 -
Cca05g02047 1093 SMART serkin_6 788 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02047 1093 SMART LRR_sd22_2 337 366 - -
Cca05g02047 1093 SMART LRR_sd22_2 192 218 - -
Cca05g02047 1093 SMART LRR_sd22_2 505 534 - -
Cca05g02047 1093 SMART LRR_sd22_2 551 570 - -
Cca05g02047 1093 SMART LRR_sd22_2 289 315 - -
Cca05g02047 1093 SMART LRR_sd22_2 648 673 - -
Cca05g02047 1093 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 22 1077 - -
Cca05g02047 1093 ProSitePatterns Protein kinases ATP-binding region signature. 794 817 IPR017441 GO:0005524
Cca05g02047 1093 SUPERFAMILY RNI-like 324 685 - -
Cca05g02047 1093 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 22 1077 - -
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 211 348 IPR032675 -
Cca05g02047 1093 ProSiteProfiles Protein kinase domain profile. 788 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02047 1093 Gene3D Transferase(Phosphotransferase) domain 1 862 1079 - -
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 551 628 IPR032675 -
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 54 210 IPR032675 -
Cca05g02047 1093 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Cca05g02047 1093 Gene3D Phosphorylase Kinase; domain 1 753 861 - -
Cca05g02047 1093 PRINTS Leucine-rich repeat signature 436 449 - -
Cca05g02047 1093 PRINTS Leucine-rich repeat signature 648 661 - -
Cca05g02047 1093 Pfam Leucine rich repeat N-terminal domain 55 94 IPR013210 -
Cca05g02047 1093 SUPERFAMILY RNI-like 101 422 - -
Cca05g02047 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Cca05g02047 1093 ProSiteProfiles Leucine-rich repeat profile. 650 672 IPR001611 GO:0005515
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 629 713 IPR032675 -
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 452 550 IPR032675 -
Cca05g02047 1093 Gene3D Ribonuclease Inhibitor 350 451 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02047 Cca-Chr5 40232107 40235845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02047 51 1081 Receptor kinase-like Gene Family AT5G56040 66.795 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca05g02047 Pkinase 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02047 - - gmx:100813139 1856.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02047 05 40232107 40235845 Cca05g02047 05 40232107 40235845 ECH