Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02045 ATGAATCCTCGGTGCTTCCTTCATCCACAACCTCAAGAGTATAGCATGGTTTCATTTTCTTCAAATTCTGCAACAGAAGATAGGGTGGCTAGTGCAAGAAACAGGCCTTCTCGTGCCACCCCTCCTTCCTTTTTGGTTCGTATGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTAAGGAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAACCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGGTTGTCCAAATAACCATTACAACATTCACTTTGACTATTTCCAAGAGGGAGAGACCTGTTTGGCCTATGAGGATTTGGATTTCTGGTTATGATATTGGCTGTGTTCTTAATCTGCTGCTACTTTATGGGCGCTACCATCAAATTTATCCCACTCAAGGGGATGCTCTCAACCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGGATGTCACACTTGATGAATAAATGCCGGACTTCACTTGAACTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCGTCAAGCTCCAAAACTCCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCATTCACCTTCCTCGGGTACAACATGAACGTGGCCTCTTCTGATAAAGGAGCCTCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACACAGAGAAGCCCGGAGCAAGTTAGAGCTTGGCAATGACTCTGAAGGCAGTGAAAAGATGATCAATGAAGACCAAGAATGCTGTATCTGCTTAGCCAAGTACAAGGACAAAGAGGAAGTTAGACAGTTGCCATGTTCCCATACGTTCCACCTAAAATGTGTGGATCAATGGCTAAAAATTACATCCTGCTGCCCTCTTTGCAAACAAGGATTGGAAAGAGAATCCAAAGCCACTTGGGAAGCAAGCAATTCAACAGCGGAAGAACATCATATTTTGTATACCCTTCTCAACTACCTAGGAAAGAGATGGAGAACAATGCAGAGAAAAAGCCCCCTTGCATGA 1080 0.4296 MNPRCFLHPQPQEYSMVSFSSNSATEDRVASARNRPSRATPPSFLVRMAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQITITTFTLTISKRERPVWPMRIWISGYDIGCVLNLLLLYGRYHQIYPTQGDALNLSDMEQQRNNEETRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFRQAPKLHVLCITLLAWNAFTFLGYNMNVASSDKGASDDQISQLPSWRHREARSKLELGNDSEGSEKMINEDQECCICLAKYKDKEEVRQLPCSHTFHLKCVDQWLKITSCCPLCKQGLERESKATWEASNSTAEEHHILYTLLNYLGKRWRTMQRKSPLA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02045 359 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Cca05g02045 359 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 220 318 - -
Cca05g02045 359 SMART ring_2 273 313 IPR001841 -
Cca05g02045 359 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 220 - -
Cca05g02045 359 Pfam Ring finger domain 272 314 IPR001841 -
Cca05g02045 359 Coils Coil 151 171 - -
Cca05g02045 359 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 220 318 - -
Cca05g02045 359 CDD RING-H2_RNF111_like 272 314 - -
Cca05g02045 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 319 IPR013083 -
Cca05g02045 359 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 220 - -
Cca05g02045 359 SUPERFAMILY RING/U-box 264 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02045 Cca-Chr5 40205754 40209912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02045 36 317 C3H Transcription Factor Family AT4G26580 63.158 9.47e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02045 - - gmx:100813670 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02045 05 40205754 40209912 Cca05g02045 05 40205754 40209912 ECH