Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02043 ATGGAGAATGAAAGAGAAGATGAGATTGAGGACATGTCAATGTCACCCCCATCTCTCGGCTCCATGCAGATTGCAGGGAGCAATGGCTTTGGTCACAGCATGGAGTTCATGTCTCAGGCATACCTTCCCAATATGTACTCAGAGATTGACATAAAAGTTGAGGATTCCACTTTCAACCAAGATCCCCCTCTCCCCATTTATCTCAAGTTTGAAGATGTAGAGTTTAGGGTGAGAGATAGCCAAGCTAATAACCCTGTGAAAACAATGATGTCAAAAGTAGGCACACAACACCACGAGGAAGAAGATAGATACAAGACAATTTTGAAGGGTATCACAGGAAGCATTGGACCCGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGTAGTGGGAAGACAACCTTGTTGAGAGTTGTAGGGGGCAGATTAGTTGACAATGTAAAAGGGAAGATAACTTACAATGATGTTCGATTCAATCCAGCAGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTGCTTTTCCCACAACTCACAGTAGAGGAAACACTAATCTTCTCTGCATTCTTAAGGCTGCCAACAAATATGAGCAAGCAACAAAAATATGCAAGAGTGGAGACCACAGTCAAGGATCTAGGCCTTGAAAGATGTCGCCACACAAAAATAGGTGGAGGATATCTCAAAGGCATATCTGGAGGAGAAAGGAAGAGAACCAGCATAGGCTATGAAATCCTTGTTGATCCTTCACTGATTCTACTTGATGAACCAACTTCAGGCCTTGATTCCACCTCAGCAAACAGACTCCTTCTCACTCTTCAGGGACTTGCTAAGGGTGGAAGGACCATAATCACAACAATTCACCAGCCATCCAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCCGTTTACTATGGAATGGCTAGGGACTCAATGCATTACTTTTCATCCTTGAGGTTCACCCCGGAAATACCAATGAATCCTGCAGAGTTCCTGCTTGACTTGGCAACTGGACAAGTGAATAACATAAGCGTTCCGCCAGAAATTTTGAAAGATCAAGAATCTGCTGACACTTCAAAAGCTGTTATTAAATGCCTACAACTCAAGTACAAACACACATTGGAACCAAAAGAAAAAGAAGAGAATCATGGAGCAGCAAACACACCAGAACATCTTCAGCTAGCCATTCAGGTAAAAAAAGACTGGACATTGAGTTGGTTTGACCAGTTCTTTATTCTTTACAAGAGAACATTCAGCGCAAGAAGCAAGGACTATTTTGATAAATTAAGACTAGTTCAAGCACTTGGCATTGCACTTTTATTGGGGCTACTTTGGTGGAAATCTTCAACCAGTACAGAGGCTCAAGTCAGAGATCAGGTTGGTTTAATGTTCTATATCTGTATATTCTGGACATCTTCATGTATTTTTGGAGCAGTCTATGTCTTTCCATTTGAAAAGGTCTACTTGGTGAAAGAAAGGAAAGCAGACATGTATAGATTGAGTGTGTACTATGCAAGCAGCACTCTGTGTGACATGGTGGCACATATTTTCTACCCTACTTTTTTCATGCTGATCTTGTACTTCATGGCTGGATTCAAGAGGACTGTTGCATGCTTCTTCCTGACTTTGTTCGCCGTGCTGTTAATAGCCATAACAAGTCAAGGCGCAGGAGAACTAGTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGGAATGGTTGCTTCTTTGATACTGATGCTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACGTACCGAAGGTGATGCAATGGTTGAAGTATTGTTCGTTCGTGTACTATGGGTTCAGACTTCTTCTGAAAGTGCAGTATTCAGGAGACCAACCATATGA 2091 0.3845 MENEREDEIEDMSMSPPSLGSMQIAGSNGFGHSMEFMSQAYLPNMYSEIDIKVEDSTFNQDPPLPIYLKFEDVEFRVRDSQANNPVKTMMSKVGTQHHEEEDRYKTILKGITGSIGPGEILALMGPSGSGKTTLLRVVGGRLVDNVKGKITYNDVRFNPAVKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPTNMSKQQKYARVETTVKDLGLERCRHTKIGGGYLKGISGGERKRTSIGYEILVDPSLILLDEPTSGLDSTSANRLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGMARDSMHYFSSLRFTPEIPMNPAEFLLDLATGQVNNISVPPEILKDQESADTSKAVIKCLQLKYKHTLEPKEKEENHGAANTPEHLQLAIQVKKDWTLSWFDQFFILYKRTFSARSKDYFDKLRLVQALGIALLLGLLWWKSSTSTEAQVRDQVGLMFYICIFWTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYASSTLCDMVAHIFYPTFFMLILYFMAGFKRTVACFFLTLFAVLLIAITSQGAGELVGAAVMSIQRAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNGCFFDTDAIPSHRWLLCPARTEGDAMVEVLFVRVLWVQTSSESAVFRRPTI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02043 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 3 579 - -
Cca05g02043 696 Pfam ABC-2 type transporter 415 578 IPR013525 GO:0016020|GO:0140359
Cca05g02043 696 SMART AAA_5 117 308 IPR003593 -
Cca05g02043 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 579 - -
Cca05g02043 696 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g02043 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 330 IPR003439 GO:0005524
Cca05g02043 696 CDD ABCG_EPDR 104 312 - -
Cca05g02043 696 Pfam ABC transporter 108 258 IPR003439 GO:0005524
Cca05g02043 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 322 IPR027417 -
Cca05g02043 696 Gene3D - 92 324 IPR027417 -
Cca05g02043 696 Coils Coil 578 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02043 Cca-Chr5 40185220 40188639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02043 107 291 Calmodulin-binding Proteins AT2G36910 28.947 4.13e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02043 K05681 - gmx:100815259 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02043 05 40185220 40188639 Cca05g02043 05 40185220 40188639 ECH