Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02029 ATGGGCATGGGCATGGGTATCTTCATCTTCATCTTGACGTTGTTCTTGGGCGGTGTGTGTGTGGTGGCAGAATCAGAAGCCAAGGCGAGCTTCGACTTCCCCTCTTTCAGTCTGAACAACAACATCACCCTCCTCGGCGATTCCTCCCTCATGAACAACGGCGTCCTCTGCCTCACCGGCGCCGCCCCCACTTACAGCACCGGCGCCGTCGTCTACAACCACCCCATCTCCCTCTTCGACCCCCAAACATCGACCTTGGCctccttctccgccaccttctccttctccatcAGCACGCTCAACCCCGCCTCCTCCGGCGACGGCCTCGCCTTCTTCCTCTCCCCCCACAACCTCTCCCTCCTCCTCTCCGGCCCCCTCGGCCTCCCCGCCGCCTTCGTCGCCGTCGTGTTCGACACGCGCCTCGACTACCCCTTCCACGTCGCCTTCGATATCAACACCATCAAGCCCCTCAAAACCGGAGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCGCCTCATGGATCGACTACAACACCGAGAAAACCTCTCTCAACGTTTTCTTGAGCTATTCTATGTCCAAACCCCTCCACCCCGTTCTCTCCGTTCACGTCGATCTCTCTCAACACCTGAAGGACCCCGTTTACGTTGGCTTCTCCGCTTCCACTCAGGGAATCACCGAGCTTCACCAAATCCACAGCTGGAGCTTCCTTCGCAGTGCCTTTCTTCCTCCAAGAACCAGGTTGCACCCTCATAACGTTTCCGTCGTCGGAATGCGCGCTGTTCCCGCTTCGAGTTCCCCCAAGAAGCGTCGTCATCATCACAAGAGGGTTGCGTTTCTCACCGGTTCAGTTTCTGTCTTCGCGGCTTTTATGTTATTGGGGTATGTTTTTGTTCGGAGGTGGCGAGGTAGGAGGAGAAAAGAGAAGGGTTTCGTAGGTGAAAATTTCGTGGCGTGTCCTCGGGCGTTTGATTACAAAGAGTTGAAGTCTGCCACGAGGGAGTTTCACCCTAGTAGGATCGTTGGACATGGATCGTTTGGAACAGTGTACAAGGCTTTCTTTATGTCTTCTGGAACCATTGCTGCTGTGAAAAGGTCGCGTCACTCTCACGAAGGGAAGATCGAGTTTCAGTCTGAACTCTCCATCATAGCAGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGCGTTGAGAAGGGTGAGTTGTTGCTGGTGTATGACTTCATGCCAAACGGAAGCTTGGACAAGATGCTTTACAAGGAGCCTGAAAGAGGGAAGCTCTTAAGTTGGTCTCACAGGAAAAACATTGCTCTAGGTTTGGCTTCTGTGCTGGTTTACCTTCACCAAGAGTGCGAGCAGAGAGTGATCCACAGGGACATTAAAGCTGGAAACATATTGCTGGATGGAAACTTGAACCCTAGGTTGGGTGATTTTGGATTGGCAAAGCTGATGGACCATGATAAGAGCCCTGTGTCGACACTGACAGCTGGCACAATGGGGTACCTTGCACCTGAGTATCTTCAGTATGGGAAGGCCACTGACAAGAGTGACGTGTTCAGCTATGGGGTGGTGGTGCTAGAGGTGGCATGTGGGAGGAGGCCAATTGAGAGAGAGGGGTCAAACTCAAAGATGGTGAACCTGATTGACTTTGTTTGGGGGCTGCACTCTGAAGGGAGGGTGGTTGAGGCTGCTGATAAGAGGCTGAATGGGGAGTTTGAGGAGGAGGATATGAGGAACCTCTTGCTATTGGGCTTGAGCTGTGCTAACCCTCACAGTTCTGAGAGGCCTTCCATGAGAAGAGTCTTGCAGATTCTCAACACTGAGGCTGCACCACTTGTTGTGCCTAAGGTCAAGCCAACACTCACCTTCTCTTCTCACCTTCCTCTCACTATTGAGGACATTGTTTCTGATGCTCAAGACTTGGGTACTAGCCACTCTATGTGCGAGATCAAAATTCACTCAATGTAA 1986 0.5191 MGMGMGIFIFILTLFLGGVCVVAESEAKASFDFPSFSLNNNITLLGDSSLMNNGVLCLTGAAPTYSTGAVVYNHPISLFDPQTSTLASFSATFSFSISTLNPASSGDGLAFFLSPHNLSLLLSGPLGLPAAFVAVVFDTRLDYPFHVAFDINTIKPLKTGDPILHGIDLKSGNTIASWIDYNTEKTSLNVFLSYSMSKPLHPVLSVHVDLSQHLKDPVYVGFSASTQGITELHQIHSWSFLRSAFLPPRTRLHPHNVSVVGMRAVPASSSPKKRRHHHKRVAFLTGSVSVFAAFMLLGYVFVRRWRGRRRKEKGFVGENFVACPRAFDYKELKSATREFHPSRIVGHGSFGTVYKAFFMSSGTIAAVKRSRHSHEGKIEFQSELSIIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLSWSHRKNIALGLASVLVYLHQECEQRVIHRDIKAGNILLDGNLNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKSDVFSYGVVVLEVACGRRPIEREGSNSKMVNLIDFVWGLHSEGRVVEAADKRLNGEFEEEDMRNLLLLGLSCANPHSSERPSMRRVLQILNTEAAPLVVPKVKPTLTFSSHLPLTIEDIVSDAQDLGTSHSMCEIKIHSM 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02029 661 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Cca05g02029 661 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Cca05g02029 661 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02029 661 PANTHER - 21 631 - -
Cca05g02029 661 Gene3D Transferase(Phosphotransferase) domain 1 415 629 - -
Cca05g02029 661 CDD lectin_legume_LecRK_Arcelin_ConA 30 240 IPR001220 GO:0030246
Cca05g02029 661 CDD STKc_IRAK 345 612 - -
Cca05g02029 661 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 631 - -
Cca05g02029 661 Gene3D - 29 244 - -
Cca05g02029 661 ProSiteProfiles Protein kinase domain profile. 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02029 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 242 IPR013320 -
Cca05g02029 661 SUPERFAMILY Protein kinase-like (PK-like) 321 633 IPR011009 -
Cca05g02029 661 SMART serkin_6 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02029 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Cca05g02029 661 Pfam Legume lectin domain 29 243 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02029 Cca-Chr5 40085006 40087875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02029 25 646 Receptor kinase-like Gene Family AT5G55830 55.828 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g02029 Pkinase 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02029 - - gmx:102668712 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02029 05 40085006 40087875 Cca05g02029 05 40085006 40087875 ECH
Cca09g01232 09 34555648 34557906 Cca05g02029 05 40085006 40087875 PCT