Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02027 ATGGAACCTGGGAATTCCTTCTTTCATTATGGTCCAGCTGAAAATTCAAGTTCTGATTCAAAGGGTGAAGGGAATAGCAGCAATGGTGAAGAGCAGAAGCAGGAGAATCGATATTTGCCTATTGCATGCGTGCACAGGCTCATACGCAAGGTTCTTCCAAAGAACACCAAAGTCTCAGACGAATCGAAGGAGAAAATAATGGAGTGTGTCACTGAGTTCATCAGCTTCATCACTGTGGAGGCTAACCACAAATGCAAAGAGGAGCAGCGCAAAACCATCACTGCTGAAGATCTCATACATGCTATGGACAAGCTTGGCTTCGAACCATATGCCAAGCTTCTCCTCTTTTACCTCCATCGCTATCGTCAACATCACCAAGCTAACCAAGTCCCACATCGTGCACCACTGTCCCTTCCTGCACTCCCAACAATTGCAAATTATGCTCATGCTGTGCTGCCACCCCCACCACAACCTTTTCTTCCATTTCCAAACCCAACCATGGATGCCTTTTATGGTGATGCTTCAATTAATATTGGTGCCAATATTAATGTTAACTATGATAATGCTGCTTACTTTAATGCTCACAACTTCTTCGGTGGTAACTGA 606 0.4439 MEPGNSFFHYGPAENSSSDSKGEGNSSNGEEQKQENRYLPIACVHRLIRKVLPKNTKVSDESKEKIMECVTEFISFITVEANHKCKEEQRKTITAEDLIHAMDKLGFEPYAKLLLFYLHRYRQHHQANQVPHRAPLSLPALPTIANYAHAVLPPPPQPFLPFPNPTMDAFYGDASINIGANINVNYDNAAYFNAHNFFGGN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02027 201 MobiDBLite consensus disorder prediction 1 35 - -
Cca05g02027 201 Gene3D Histone, subunit A 25 134 IPR009072 GO:0046982
Cca05g02027 201 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 18 135 - -
Cca05g02027 201 SUPERFAMILY Histone-fold 35 128 IPR009072 GO:0046982
Cca05g02027 201 MobiDBLite consensus disorder prediction 10 34 - -
Cca05g02027 201 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Cca05g02027 201 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca05g02027 201 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Cca05g02027 201 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Cca05g02027 201 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02027 Cca-Chr5 40075774 40079135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02027 25 123 CCAAT-HAP3 Transcription Factor Family AT5G47670 55.882 8.61e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca05g02027 CBFD_NFYB_HMF 5.3e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02027 K08065 - han:110935072 124.02