Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02024 ATGGGTGACTCGGATAACGACTCGGGCGGGGCGGCGAACAGGAGTGAGTTGTCGCCTCGGGAGCAGGACCGCTTCATAACGGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGGAAGACCATCAACGGCGACGACCTCCTCTGGGCCATGACAACGCTCGGCTTCGAGGACTACGTCGACCCTCTCAAGGTTTACCTCCAGCGCTTCCGGGAGATCGAGGGCGAGAAGACCGTCGCCGCTCGCGACAAGGACGCTGCCTCCGCCGCCGCTACTTACGActacccctccccctccccctctccctcccccgccGTCATGcaccatcaccatcaccatcaccatcacGGACACGGACACGTGTACGGCTCCCCCGCCTTCCACGCTCCTGTTATgcctatgcctaagcctgggcctttgcctgggcctgggcctggccctggcccCACTTATCCTCCTGGTAGACCCAGATAG 474 0.481 MGDSDNDSGGAANRSELSPREQDRFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLQRFREIEGEKTVAARDKDAASAAATYDYPSPSPSPSPAVMHHHHHHHHHGHGHVYGSPAFHAPVMPMPKPGPLPGPGPGPGPTYPPGRPR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02024 157 MobiDBLite consensus disorder prediction 130 157 - -
Cca05g02024 157 MobiDBLite consensus disorder prediction 106 121 - -
Cca05g02024 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 51 IPR003958 -
Cca05g02024 157 SUPERFAMILY Histone-fold 25 105 IPR009072 GO:0046982
Cca05g02024 157 MobiDBLite consensus disorder prediction 80 157 - -
Cca05g02024 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca05g02024 157 MobiDBLite consensus disorder prediction 1 44 - -
Cca05g02024 157 MobiDBLite consensus disorder prediction 17 44 - -
Cca05g02024 157 PRINTS CCAAT-binding transcription factor subunit A signature 15 33 - -
Cca05g02024 157 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Cca05g02024 157 PRINTS CCAAT-binding transcription factor subunit A signature 34 52 - -
Cca05g02024 157 Gene3D Histone, subunit A 23 96 IPR009072 GO:0046982
Cca05g02024 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 25 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02024 Cca-Chr5 40063515 40065520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02024 1 81 CCAAT-HAP3 Transcription Factor Family AT4G14540 55.462 4.06e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca05g02024 CBFD_NFYB_HMF 1.9e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02024 K08065 - gmx:100813169 147.132