Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02019 ATGGCCAACAATGGTGTAAAGGTGCCTTTGTTGTCAGGATCACCCGATGTGACACAAAAGGCTAAATGGCGGTTAAACAAGAGGAGGCTCCTCCGTTCTAGAAGTGCTCCTGGAACAGATTGTGTTCCTGCTGAGACAAATGGCAATGAACCAATTCCCCATACTGTCTCTATATTTCAGAATGTACACCCAAGCTTTAAAAGAGTTGCTATCTACCTTGTAGTCTATTTAGGTGTAGGTGCTTTAATCTTCTACCTTGTCAGGAACCAGATTAGGGGGTTAAAAACAGATGGAATCCTTGATGCTTTATACTTCACAATTGTGACAATGACGACTGTTGGATATGGAGATCTTGTTCCCAATAGCGACCTTACAAAACTACTTGCATGTGCTTTTGTTTTCTCTGGAATGGCATTGATGGGACTAATTCTAAGCAAGGCAGCAGACTACTTGGTTGAGAAACAGGAATTTTTGCTAGTTAAAGCTATGCGCATGCACCAAAAGGTTGGTTCAACTGAAATTTTAAAGGAGCTTGAGACCAATAAAACAAGATACAAATTTTTTCTGGTCTTTTTCCTTGTTTGGATTCTCATCATTGCGGGGACAATTTTTCTGGTCACTGTTGAGAAATTGGATATTGTTGATGCATTCTACTGTGTTTGTTCTACATTTACAACCCTTGGTTATGGGGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTAACAGGTACTATTTGTTTAGCTCAGGTTTTCCTTTACATGGCTGAGCTAAATACTGAAAGCAGACAAAAGGAACTTGTCAAGTGGGTTCTTACTAGGAAAATGACCCATTTAGATTTGGAGGCTGCAGATCTTGATGAGGACGGAACTGTTGGGGCTGCTGAATTCgttatttataagctcaaagagatggggaagattagtcaagaagatatatcacttgtgatgcaggagtttgaagagcttgatGTTGATGATTCTGGTACTCTTTCAGCTTCTGACATAACGCTTGCTCAGTCATCTTAA 1047 0.3696 MANNGVKVPLLSGSPDVTQKAKWRLNKRRLLRSRSAPGTDCVPAETNGNEPIPHTVSIFQNVHPSFKRVAIYLVVYLGVGALIFYLVRNQIRGLKTDGILDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEFLLVKAMRMHQKVGSTEILKELETNKTRYKFFLVFFLVWILIIAGTIFLVTVEKLDIVDAFYCVCSTFTTLGYGDKSFSTQAGRIFAVFWILTGTICLAQVFLYMAELNTESRQKELVKWVLTRKMTHLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEELDVDDSGTLSASDITLAQSS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02019 348 Gene3D - 166 275 - -
Cca05g02019 348 SUPERFAMILY Voltage-gated potassium channels 65 167 - -
Cca05g02019 348 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 18 341 - -
Cca05g02019 348 SUPERFAMILY EF-hand 281 344 IPR011992 -
Cca05g02019 348 PRINTS Two pore domain K+ channel signature 222 250 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca05g02019 348 PRINTS Two pore domain K+ channel signature 296 305 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca05g02019 348 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Cca05g02019 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Cca05g02019 348 SUPERFAMILY Voltage-gated potassium channels 159 284 - -
Cca05g02019 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 18 341 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca05g02019 348 Pfam Ion channel 195 264 IPR013099 -
Cca05g02019 348 Pfam Ion channel 71 152 IPR013099 -
Cca05g02019 348 Gene3D - 63 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02019 Cca-Chr5 40030869 40034081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02019 49 348 Ion Channels AT5G55630 65.563 1.64e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02019 K05389 - gmx:100800137 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02019 05 40030869 40034081 Cca05g02019 05 40030869 40034081 ECH