Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02015 ATGATGATGATGATCATGGGGTTGTTGTGTTCAAGAGTAGTGTTCTTTTTTGTTTTGGTTTTCGTGATTTGGGTTCAGGTGGATTCAGCAGAAGGTGGTGTTAGGAACTACATTAGTTGGGAGGATTTTCAGGTGAATGAACAAAGGTTGTTCTTTAAAAAGTCCCATAACGATGTTCGAGTTATTGTTGTTAACCAGAATGGTGGGGGACATTCCAAAACTGTTCAAGGTGCTGTAGATATGATTCCAAAGAATAACAAACACAGGGTGAAAATTTACATTAATCCAGGAATTTACAGAGAAAAAGTGTATATTCCTGTCAACAAGCCTTATGTATCATTTATAGGCAAAAGAAATCAAACAGCAAGGACTGTTATTACTTGGAACAGTAAGTCATCAGACATGGGTCCAAATGGCCAAGCATTGGGCACCTATGATTCAGCAACAGTGGGAGTGGATTCAGATTATTTCTGTGCAACTGCGGTAACTTTTGAGAACTCAGTGATTGCATCGGCTGGTGGGAAAGGGATGCAAGCAGTGGCACTGAGAATAAACAGTCCAAGAGCCATGTTCTACCGAGTGAGGATCAAGGGAACACAGGACACTCTCTTGGACAACACAGGAACACATTACTTCTTAAAGTGTCGTATTGTAGGAAAAGTTGATTTTATCTGTGGCAGTGCAAAATCACTCTATGAGAATTGTCGTCTTCAATCAGTAGCTGAGAACTATGGAGCAATAGCAGCACATCATAGGAATTCACCGAAAGAAGACACAGGTTTTTCTTTTGTAGGGTGCAGTATTAGAGGAACTGGCAGTGTGTACCTTGGCAGAGCATGGGGGAACTACTCAAGAATTATATACTCCAAATGTAACATGGATGGTATTATTAATCCTGAAGGGTGGTCAGAATGGAATCATCCAGACAGAAAGAAGACTGCAGTGTTTGGTGAGTATGAATGCAAAGGAGAAGGAGCAGATAGAAGATTTAGAGTGCCTTGGTCAAAATCATTGAGCTATCAGGAAGCAAGGCCTTTCCTTTATGAGAGCTTCATTGATGGAGAGCAGTGGCTTAGATTGTAG 1083 0.409 MMMMIMGLLCSRVVFFFVLVFVIWVQVDSAEGGVRNYISWEDFQVNEQRLFFKKSHNDVRVIVVNQNGGGHSKTVQGAVDMIPKNNKHRVKIYINPGIYREKVYIPVNKPYVSFIGKRNQTARTVITWNSKSSDMGPNGQALGTYDSATVGVDSDYFCATAVTFENSVIASAGGKGMQAVALRINSPRAMFYRVRIKGTQDTLLDNTGTHYFLKCRIVGKVDFICGSAKSLYENCRLQSVAENYGAIAAHHRNSPKEDTGFSFVGCSIRGTGSVYLGRAWGNYSRIIYSKCNMDGIINPEGWSEWNHPDRKKTAVFGEYECKGEGADRRFRVPWSKSLSYQEARPFLYESFIDGEQWLRL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02015 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 18 360 - -
Cca05g02015 360 Gene3D - 57 360 IPR012334 -
Cca05g02015 360 Pfam Pectinesterase 62 354 IPR000070 GO:0030599|GO:0042545
Cca05g02015 360 PANTHER PECTINESTERASE QRT1 18 360 - -
Cca05g02015 360 SUPERFAMILY Pectin lyase-like 61 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02015 Cca-Chr5 40009848 40012260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02015 34 312 Carbohydrate Esterase AT5G55590 57.047 2.52e-123 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02015 K01051 - gmx:100804220 612.838