Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02014 ATGAGGTTATCAGTTTTGGTTTATTTGGTTTTGTGGTTGAAGTGTGTTCAGGTGGTGCATGGTGATATCGTTGCTAGAAACTTCATTACGTGGGAGGACTTCATGGTGGATGAAGATGGTATAGCATATTCCGACGTTGGTGGTCGAGTCATTGTGGTCGATCAAAGTGGTAATGGAGATTCAACAACTGTTCAAGGAGCTGTAGATATGGTTCCCCACAACAACACACAAAGGGTGAAGATATTCATTTATCCTGGAACATACAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTAATTTCATTTATAGGTAAGCCTAACATAATGGGCAATGGCAACGCATTGAATTCAATGGACATTGCCAATGCCATACTACCTATTCTCACTAACAGTACTAAGGCATCAGACAAAGCCTCCGACGGCCAAGAATTCGGCACCATTAGAACAGCAACTCTGTGGGTACAGTCTGATTTCTTCTGCGCCACTGCCATTACAATTCAGAATTTGGTAGATAAAGATGCAGATAAACGTCAAGCAGTAGCATTGCGTGTAGATGGTGATAAAGCTGTATTCTACCAAGTTAGGCTTGTGGGGGAGCAGGACACCCTCCTAGATAACACAGGAATCCATTATTTCTATCAAAGTTACATTCAAGGATCCGTTGATTTTATATTCGGCAATGCAAAATCATTGTTCCATGAGTGTGTGCTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGGGATTCAGCAGATGAAGACACAGGGTTTTCATTTGTTGATTGCAGAATCACGGGAACTGGTAGCATCTTTCTTGGGAGAGCTTGGGGGAAGTATGCAACAACAGTATATTCCTACTGTGACATGGATGATATTATTAATCCTTTGGGATGGAGTGATTGGGACAATCCATCTAGCCAAGGAAGTGCAATGTTTGGGGAGTATGAGTGTTCGGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCAAAAGCTTTAAGCATTGAGGAAGCCTGGCCCTTCCTTGGCAGGGACTACATATATGGAGAGGAATGGCTCAGACTATAA 1086 0.43 MRLSVLVYLVLWLKCVQVVHGDIVARNFITWEDFMVDEDGIAYSDVGGRVIVVDQSGNGDSTTVQGAVDMVPHNNTQRVKIFIYPGTYRERVHVPKSKPLISFIGKPNIMGNGNALNSMDIANAILPILTNSTKASDKASDGQEFGTIRTATLWVQSDFFCATAITIQNLVDKDADKRQAVALRVDGDKAVFYQVRLVGEQDTLLDNTGIHYFYQSYIQGSVDFIFGNAKSLFHECVLYSVAEFWGAIAAHHRDSADEDTGFSFVDCRITGTGSIFLGRAWGKYATTVYSYCDMDDIINPLGWSDWDNPSSQGSAMFGEYECSGKGSNRSERVEWSKALSIEEAWPFLGRDYIYGEEWLRL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02014 361 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 361 - -
Cca05g02014 361 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Cca05g02014 361 SUPERFAMILY Pectin lyase-like 48 359 IPR011050 -
Cca05g02014 361 Gene3D - 49 361 IPR012334 -
Cca05g02014 361 Pfam Pectinesterase 51 106 IPR000070 GO:0030599|GO:0042545
Cca05g02014 361 Pfam Pectinesterase 136 355 IPR000070 GO:0030599|GO:0042545
Cca05g02014 361 PANTHER PECTINESTERASE QRT1 8 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02014 Cca-Chr5 40001759 40004954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02014 1 312 Carbohydrate Esterase AT5G55590 53.433 2.38e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02014 K01051 - gmx:100775690 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02014 05 40001759 40004954 Cca05g02014 05 40001759 40004954 ECH