Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02002 ATGGCTGCTATTATGTCTCTCTATCCTTATAATCCCTTGCTATACTTTTCGACTTCTTCGAGTTTCCGTTCTCAATTTTGGAACTTGGAGAGGGGGCATTTGCGTTGTGAGAAGTTGCAGAATTTGGTGGAACTCGCGGCGCATTCCAATCCGAAGATTCTCAAGACCAACAGGAAGTCAAGGTATGGAGAGGCACtgtcgctgtacgatagtgacgaagacgatgaagaaaccgatgaggatgatgatgatgacgacgacgacgatgctgatTGGCTTTCTGATGAGGAGTTTGCTGAGCCTGCCGACTTTGATGTTAGTAACAAGAGATTTAAGTCGAAGAAGATTCAAGGAAAAGATAGACAACAGAAACGGGAGTGGGGTTTGAGATCTTTTGACAATGAACAAAGCATTAGATTGCCAAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGAGTGGAAAGCTTAGTAGAAATGTAAAGGATAAAAAATATCCACGGTTGTCCGAAGAGATTCCTTTGGATGTGAAATGGTTGCCACTTCTTGATTACTTGAGCACCTTTGGAATAAAGGAATCACACTTTATCCAAATATATGAGAGGCACATGCAATCTCTTCAAATTAATGTTTCTTCTGCAAAGGAAAGGTTGGAATATTTATTGAGTGTTGGTGTTAAGCATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACTGTGGAGAACAATTTAAAGTCTCGTGTTGCTTTCTTGAGGGGCCTGGGCATACCTAATTCTAGAATAGGGCAAATCATTGCTGCTGCTCCATCCTTGTTTTCTTATAGTGTTGAGAATTCGTTAAAACCAACTGTTAGATATTTAGTTGAGGATGTTGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAGAGAATTGACATTTCATGGAATACTCGTTACATGTTTCTTACCAAAGAGTTGGGTGCACCCAGAGATAGCATTGTGAAGATGGTGACAAAACATCCCCAACTTCTCCATTACAGCATAGATGATGGATTGCTTCCAAGAATAAAATTCCTAAGAAGCATAGGAATGAAAAATTCAGACATCGTGAAAGTCTTGACTAGCCTTACACAGGTGCTATCCCTGTCCCTGGAGGAGAATCTAAAGCCCAAATATTTGTACTTGGTTAATGAACTTAACAATGAGGTTCAATCCTTGACCAAATACCCAATGTATCTTAGCTTATCTTTGGACCAGAGAATTCGTCCTCGTCATAGGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTTTTGTTCCAACTGATGAATGCTTTTGCCAACAGTGGGCTGGAACTAGTTTGGATAAATATTTGGCATTTCGTCAGAGATTATTACTTCAAAAGTTTGCTGAGAAGTATGAAAGAAAAATGTGA 1476 0.376 MAAIMSLYPYNPLLYFSTSSSFRSQFWNLERGHLRCEKLQNLVELAAHSNPKILKTNRKSRYGEALSLYDSDEDDEETDEDDDDDDDDDADWLSDEEFAEPADFDVSNKRFKSKKIQGKDRQQKREWGLRSFDNEQSIRLPRSERVASLQRNESGKLSRNVKDKKYPRLSEEIPLDVKWLPLLDYLSTFGIKESHFIQIYERHMQSLQINVSSAKERLEYLLSVGVKHRDVRRILLRQPQILEYTVENNLKSRVAFLRGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRYLVEDVGIKEKDLGKVIQLSPQILVQRIDISWNTRYMFLTKELGAPRDSIVKMVTKHPQLLHYSIDDGLLPRIKFLRSIGMKNSDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSFVPTDECFCQQWAGTSLDKYLAFRQRLLLQKFAEKYERKM 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02002 491 MobiDBLite consensus disorder prediction 69 92 - -
Cca05g02002 491 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 34 483 - -
Cca05g02002 491 Pfam mTERF 184 257 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 Pfam mTERF 246 438 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 Coils Coil 197 217 - -
Cca05g02002 491 Gene3D Transcription termination factor 3, mitochondrial 241 478 IPR038538 -
Cca05g02002 491 SMART mt_12 411 442 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 268 300 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 305 337 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 378 410 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 SMART mt_12 197 227 IPR003690 GO:0003690|GO:0006355
Cca05g02002 491 MobiDBLite consensus disorder prediction 65 92 - -
Cca05g02002 491 PANTHER CGI-12 PROTEIN-RELATED 34 483 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca05g02002 mTERF 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02002 K15032 - gmx:102660933 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02002 05 39891883 39894856 Cca05g02002 05 39891883 39894856 ECH