Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02000 ATGCAAATGTCTCAGAAGCATAAAGTGTCCTATGGCTCTAACAGGTTCAACATTGAGCATGTGCAAAATCTGGCGTCATGTTGCATCCTGAAAAGTGAGAACCTAGACTACTACTCATCCTCTGATAACAGTAGCCATGCAACCTATCCTTCTGTTCGTACTTTAGAGCAATATTGCACCCTGGAATCTTCCACAAACAACAGTTTCCCTTCCCTAAATTCCCCATCTACTATCAGTTTCTCACCTAACAATAGCCCACTCTCAAATCTACAGTCAAAATCATATGTGTTGAGTTCGCAGAATTCTCTTGAAATTATGAATGATTCGCTCAAAAATGAGTCTTGCTTGACACACAATGACGATGACCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATGCTGGATATATATGATACTGTTATCCCAGAAGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAAAGAATGATGGAAATGATATCTAGAGGAGATTTGAAAGAGATGCTTTGTACATGTGCAAAAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTGCGGAAAATGGTCTCCGTGTCTGGCAATCCAATCCAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTTCACGGCTGGCCTCTTCAGGAAGCACGATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGTGAACTCCTTTCACACATGCATCTACTATATGAAATCTGTCCATATCTCAAATTTGGGTACATGTCAGCAAATGGAGCTATTGCCGAAGCCATGAAGGAAGAAAGTGAAGTCCACATTATTGATTTTCAGATTAACCAGGGTATTCAGTGGGTAAGCCTAATCCAAGCTCTTGCTGGCAGACCTGGAGGACCCCCCAAGATCAGAATAACAAGTTTTGATGACTCAACTTCAGCTTATGCCAGGGGAGGGGGCCTTGAAATTGTTGGAGAAAGGTTATCAAAACTTGCACAAGCATATAACATACCCTTTGAGTTCCATGCTATAGGAGCTTCTCCCACTGAGGTGGAACTTAAAGACCTTGAACTTCAACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCATCATGTTCCAGATGAAAGTGTGGATATTCAGAACCATCGTGACCGGTTGGTGAGATTGGCAAAGTTCTTGTGTCCTAAGATTGTGACACTAGTTGAGCAAGAATCAAATACTTGTGTCCCATTCTTGCCCCGTTTTATGGAGACAATGAACTACTACTTGGCTGTTTTTGAATCAATTGATGTTGCTCTACCGAGGGAGCATAAAGAAAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAATAGCATGTGAAGGGGCAGAAAGAGTAGAACGTCATGAGCTTCTAAGGAAGTGGAGATCGCGTTTCGCAATGGCTGGATTCACACCATATCCATTGAACTCCTTTATTAACAGTTCAATAAAAAATCTTCAGCAAAGCTACCGAGGACATTACACTCTAGAAGAGAGAGACGATGCTATATGTCTTGGTTGGATGAATCAAGTACTTATTACCTCTTGTGCTTGGAGGTGA 1635 0.419 MQMSQKHKVSYGSNRFNIEHVQNLASCCILKSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTNNSFPSLNSPSTISFSPNNSPLSNLQSKSYVLSSQNSLEIMNDSLKNESCLTHNDDDLRHKIRELESAMLGHDADMLDIYDTVIPEESDSFLLEAERWKRMMEMISRGDLKEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVSRLASSGSTIYKALKCKEPTGSELLSHMHLLYEICPYLKFGYMSANGAIAEAMKEESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITSFDDSTSAYARGGGLEIVGERLSKLAQAYNIPFEFHAIGASPTEVELKDLELQPGEAIAVNFAMMLHHVPDESVDIQNHRDRLVRLAKFLCPKIVTLVEQESNTCVPFLPRFMETMNYYLAVFESIDVALPREHKERINVEQHCLAREVVNLIACEGAERVERHELLRKWRSRFAMAGFTPYPLNSFINSSIKNLQQSYRGHYTLEERDDAICLGWMNQVLITSCAWR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02000 544 Pfam GRAS domain family 176 544 IPR005202 -
Cca05g02000 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 543 IPR005202 -
Cca05g02000 544 ProSiteProfiles GRAS family profile. 166 544 IPR005202 -
Cca05g02000 544 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02000 Cca-Chr5 39882374 39885904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02000 51 544 GRAS Transcription Factor Family AT1G50600 60.279 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca05g02000 GRAS 2.7e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02000 - - gmx:100779977 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02000 05 39882374 39885904 Cca05g02000 05 39882374 39885904 ECH
Cca09g01178 09 33314427 33318048 Cca05g02000 05 39882374 39885904 PCT