Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01998 ATGGACGCCGCCACCACCAACGCCGGCTCGCCCCGCCCCAGCTCTGAGCTCCAGCTCAACGGGGCGTCAGAGGATCCGAATCGAAGCGGGTTGGGTCAGAATTCGTCGGCGAGGTACAAGCTCATGTCGCCGGCGAAGCTTCCGATCTCGAGATCGCCGTGCATCACGGTTCCTCCGGGGCTGAGTCCTACGTCGTTTCTGGAATCCCCTGTTCTTCTTTCCAACATGAAGGTGGAGCCTTCACCAACTACAGGGTCCCTTCGTAAGCTTCAGCAAACATTACATGGTTCTATGGCTTCTGCTGCCTCTGCTACATTTCCGGTTCCTGCAGACTTCAACAACCATGTAAGTAAACAATCTAATCAAGTAGAAGGTCCAGGGAAAGCTCAATCATTTGCTTCCTCACCATTTGTTGAAAGTGAGATAGCAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACAAATGGTTAGTTCTGGTGCTAGTACTCCTGTTGACGTTGATTTGGATGACATTAACCACAAAGGTAACGCAGCTACTGGGCTTCAAGCATCACATGCTGAGGTCAGAGGCAGTGGACTTTCAGTTGCAGCTGAGAAAACATCTGACGATGGATACAATTGGCGAAAATATGGTCAAAAACTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAGTTTATAAGGGGACACATGATCATCCTAAACCTCAACCGAGCTGCCGATACTCTGCTGGTACTGTTATGTCTATTCAAGGAGGAGAAAGATCTGATAAGGCTTCTTCTTTGGCTGGCCGAGATGACAAAGCATCCACTATGTATGGTCAGGTGTCTCATGGAGCTGAGCCCAACAGTACTCCAGAATCATCACCTGTAGCAACAAATGGTGACGGTTTAGAGGGTGCTGGGTTAGTGTCAAGCAGGATCAATGAAGAGGTTGATGATGATGATCCCTTTTCAAAGCGAAGAAAAATGGAACTTGGAAATGCTGACATCACTCCTGTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCCAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAAGCAGTGATAACCACATATGAGGGTAAACATAATCATGATGTACCAGCTGCTAGGAATAGCAGCCATGACATGGCAGCACCAGCAACTGCAGGTGGACAAGCAAGAATTAAATTAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGCATTAACTCAGCTGCGGAACATAGATCACATGGACAAGGGAAAACACTGCACTCAGAATTTGGTGACCCTCAAACTCACACCACCAATTCCAATTTCAAGTTTGTTCATACTACCCAAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCTTTAAACCATTCCACTTATCCATGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA 1680 0.4607 MDAATTNAGSPRPSSELQLNGASEDPNRSGLGQNSSARYKLMSPAKLPISRSPCITVPPGLSPTSFLESPVLLSNMKVEPSPTTGSLRKLQQTLHGSMASAASATFPVPADFNNHVSKQSNQVEGPGKAQSFASSPFVESEIAVPSNELSLSSPVQMVSSGASTPVDVDLDDINHKGNAATGLQASHAEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSCRYSAGTVMSIQGGERSDKASSLAGRDDKASTMYGQVSHGAEPNSTPESSPVATNGDGLEGAGLVSSRINEEVDDDDPFSKRRKMELGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAAPATAGGQARIKLEESDTISLDLGMGINSAAEHRSHGQGKTLHSEFGDPQTHTTNSNFKFVHTTQAPVYFGVLNNSSNPYGSRDNRSDGPLNHSTYPCPQSMGRILMGP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01998 559 ProSiteProfiles WRKY domain profile. 375 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 SUPERFAMILY WRKY DNA-binding domain 200 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 32 96 IPR044810 GO:0003700
Cca05g01998 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 539 IPR044810 GO:0003700
Cca05g01998 559 ProSiteProfiles WRKY domain profile. 198 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 MobiDBLite consensus disorder prediction 483 505 - -
Cca05g01998 559 MobiDBLite consensus disorder prediction 300 327 - -
Cca05g01998 559 MobiDBLite consensus disorder prediction 527 549 - -
Cca05g01998 559 MobiDBLite consensus disorder prediction 302 318 - -
Cca05g01998 559 Gene3D WRKY domain 195 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 Gene3D WRKY domain 365 441 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 32 96 - -
Cca05g01998 559 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 105 539 - -
Cca05g01998 559 Pfam WRKY DNA -binding domain 381 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 SUPERFAMILY WRKY DNA-binding domain 372 440 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 MobiDBLite consensus disorder prediction 1 39 - -
Cca05g01998 559 SMART WRKY_cls 380 439 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01998 559 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01998 Cca-Chr5 39872877 39878568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01998 42 559 WRKY Transcription Factor Family AT4G26640 53.199 3.01e-172 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01998 WRKY 1.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01998 05 39872877 39878568 Cca05g01998 05 39872877 39878568 ECH
Cca09g01177 09 33300258 33312045 Cca05g01998 05 39872877 39878568 PCT