Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01996 ATGCCGAGTGTTAACCCTGACCCATCTGACAAAGATTCCGAGCCCTTTGTTGAGACCGATCCAACAGGGCGCTATGGTAGATACAGTGAGTTACTGGGGTGTGGTGCTGTGAAGAAAGTGTACCGTGCATTTGATCAGGAAGAAGGAATTGAGGTGGCTTGGAACCAGGTGAAGCTGAGGAACTTCTGTGATGATCCTGCCATGGTGGAAAGGCTTTACTCTGAAGTGAGGTTGCTCAGAAGCTTGACCAACAAAAACATCATTGCCCTTTACAGTGTGTGGAGGGATGAGCACCGCAACACTTTGAATTTCATCACTGAGGTTTGTACAAGTGGGAATTTGAGGGAGTACAGGAAGAAGCATAGGCATGTTTCAATGAAGGCCCTCAAGAAGTGGTCTAAGCAGATTTTGAAAGGGTTGAACTATCTGCACTTGCATGATCCCTGCATCATCCACAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGTAAGAACCATTGTGCTCACACTGTTCTTGGCACACCAGAATTTATGGCTCCAGAATTATACGATGAAGACTACACAGAATTGGTGGACATATACTCATTTGGGATGTGTGTGTTAGAGATGGTGACACTAGAGATTCCTTATAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCTTCTGGAGTTAGACCTGCAGCCTTGAACAAGGTCAAAGATCCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGGGCTAGACCTTCTGCAGCTGAGCTCCTCAGAGATCCTTTCTTtgatgagattgttgatgatgacgaaaatgatgatTGTGCTTGTTCATACCAATaa 906 0.4382 MPSVNPDPSDKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPAMVERLYSEVRLLRSLTNKNIIALYSVWRDEHRNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHCAHTVLGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAAELLRDPFFDEIVDDDENDDCACSYQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01996 301 CDD STKc_WNK 24 284 - -
Cca05g01996 301 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Cca05g01996 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 301 - -
Cca05g01996 301 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g01996 301 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 1 301 - -
Cca05g01996 301 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01996 301 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Cca05g01996 301 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01996 301 SUPERFAMILY Protein kinase-like (PK-like) 19 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01996 Cca-Chr5 39856010 39858322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01996 5 288 MAP Kinase Kinase Kinase AT5G55560 83.803 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca05g01996 Pkinase 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01996 K08867 - gmx:100786910 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01996 05 39856010 39858322 Cca05g01996 05 39856010 39858322 ECH
Cca09g01175 09 33253609 33255634 Cca05g01996 05 39856010 39858322 PCT