Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01995 ATGCAGGAAATTACAAGACATTTTGCTGTGTTTCTGAGGAGGTTGGTTTTCTTTCCTGTTCTTCTTTTCGTTACCATAGAATGTACAAAAGGTGAGTCATCAGAATCTGAGTCTTTCTTCAGCTTTCTAAGGACCCTTGATCCCCCAAACGTGCTTAACATTATCTGGATTGGATCACCATCACATCCTTGCATGATCAAGTTGAATGGTGTAACATGTAACTCAAATGCAACAAATATTGTACACATAAGGCTCGAGAACATGAACCTTAGTGGCACAATTGATGCAGATTCCCTATGCAGGCTCCAAAATTTAAGAGTGGTGAACTTGGCTAAGAACAACATTAAAGGAACTATTCCACACTCAATTTTGCATTGTACAAGGTTGACACACTTAAATCTAACCAGCAACCAATTGAGTGGAAGGTTGCCACATGCCTTAACAAAATTGAGACATCTTAGGAACTTAGACATTTCTAATAACAACTTTTCTGGTATGATACCTAGTAAACAACAATATAGGAGCCTCTTCACTTATGTGACATCAAGTAACAAGTTGGAATTGGAAAGCAACAACAGTGCCAAAGGGTGGCTAATTAAGGAAAGTGATACAAACACAATGCAGCAAGAAACGACAGATCCTAATTCTGGTAATAACAATAGATCCAGCCCACAAACCTTGTTGGTTTTAGTTTTGGGAACTTTATTGCTTTTGGTATTTCTTTACCTTCTGGCAAAAAAGATAGCAAAGTTTGATGCTGAGAGAAAGGCAGTTAAAGACCAAAATCATGTGTCTCCAATAAAAAAGGCTACAGATCTTGAAGTTCAAGAGGTGAAGCTGAAGGAAGGAGATTCTGAGCTTGTTTTCTTTGTTGAAGATCGTGAGAGGTTCACACTAGAGGACCTTCTTCGAGCCACTGCTGATTTGAGGAGTGAAAGCTTTTGTAGCAGCCTTTATAAGGTGAAGCTAGAGAATAACGTTCACTATGCAGTGAAAAGATTGAAGAATTTGCAGGTATCCTTGGAGGAATTTGGTGAAACATTAAGGAAGATTAGTAACTTGAAGCATCAAAATATTCTACCCCTTGTTGGTTACCGTTCCGCCAGTGAGGAAAAACTCATCATTTACAGATATCAAAGTAATGGAAGCCTGCTTAATCTGTTAAACGATTATGTAGCGGGTAGAAAATATTTCCCATGGAAACTGCGACTGAATATAGCATGTGGGATTGCTAGGGGTTTGGCCTTCATATACAAGAAGTTGGATGATAATCAAGAGATCATTCCTCATGGAAACCTGAAGCCATCAAACATCCTTCTTGATGAGAACAATGAGCCAGTAATAAGTGAGCATGGTTTATCAAAATTCCTGGACCCAAACACAAGTTTCCTGTTTTCATCTCATGGATACACAGCTCCTGAAAAGAGCATAACAGAAAAGGGTGATGTGTACAGCTTTGGAGTGATTCTTTTAGAGCTACTAACAGGAAAAAGCATAGAGGTTAGCAGAATAGACCTTGCTAAATGGGTGAGGTCCATGGTGAGGGAGGAATGGACAGGAGAAGTGTTTGACAAGGAAGTTAGGGTAAATGAGCATCAATGGGCTTTTCCTCTTCTCAACATAGCACTCTTGTGTGTGTCACGTTTCCAAGAAAATAGGCCAACCACTGGTGAGATTTTGGAGAAGATTGAACAGGTCATGGATGAACATGAACAACATGAGGAACGTTTTGCTTCCAACACCAACTGGGTTCTGTCTGAGATTCAAGATAAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGAGGAACGTCTCAAGGAGTATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACCACTGGTCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTTCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCTAAGAAAGCTGTTCCCCGGGATGATCAGCAAACTGTAAACAGACAGTCTGGTGGCATCCATGGATCTCCGGGTCCTGGGCGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTACTTTGATCAGTTTGGTACGATCACTGATGTTGTAGTAATGTATGATCACAACACCCAAAGGCCAAGAGGTTTTGGCTTCATCACTTTTGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCACGAACTCAATGGAAAGATGGTCGAGGTCAAGAGGGCAGTTCCGAAAGAGCTTTCCCCCGGACCTACACGGAGCCCTTTGATTGGATATAACTTTGGTTTGAATAGGACCAGTAACTTCTTAAACAGTTACGCTCAGGGTTTCAATATGAATCCAATTGGAGGTTATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGCGGGTTTAACCCATTTGGCTCCAGTAGTTTTGGAATGGGAATGAATATGGATTCAGGATTGAACCCAAGTTTTGGAGGAGCTTCCGGTTATGGTGGCAATCTAGGATACGGCCGTATGAGTCCTTTCTACAATGGCAACTCAAGCAGATACACCACTCCTATTGGCAATAATGGGGGCAATGGGAGAAGCGATTCTCTTGCGAACTCGGCTTCTAGGAGTGTTTGGGGAAATGGTGGCCTGAACAATGCCGCCAATAATCCAGTCAGCCCTGGTGCTTACTTGGGATCTGGAAGTGGAGCTTTTGGTGTTTCAATTGGAAATAATGGCACAAATTGGGGTCCATCAGTTCCAAACCAAGGTGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAAGTGGAGATAACAGCATTGGTTTAGGAGGTGGAGGTTATGGAAGGAACAGTAGCCCAAGTTTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGTTCAGTTTATAGTGATGCAGCTTGGCGATCTGCTGCTTCTGAGATAGATGCTTCTGGCTCGTTTGGTTATGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAGTGTAACAAGTAGACAACCTAATAGAGGAATTGCTGCTTAG 3207 0.4206 MQEITRHFAVFLRRLVFFPVLLFVTIECTKGESSESESFFSFLRTLDPPNVLNIIWIGSPSHPCMIKLNGVTCNSNATNIVHIRLENMNLSGTIDADSLCRLQNLRVVNLAKNNIKGTIPHSILHCTRLTHLNLTSNQLSGRLPHALTKLRHLRNLDISNNNFSGMIPSKQQYRSLFTYVTSSNKLELESNNSAKGWLIKESDTNTMQQETTDPNSGNNNRSSPQTLLVLVLGTLLLLVFLYLLAKKIAKFDAERKAVKDQNHVSPIKKATDLEVQEVKLKEGDSELVFFVEDRERFTLEDLLRATADLRSESFCSSLYKVKLENNVHYAVKRLKNLQVSLEEFGETLRKISNLKHQNILPLVGYRSASEEKLIIYRYQSNGSLLNLLNDYVAGRKYFPWKLRLNIACGIARGLAFIYKKLDDNQEIIPHGNLKPSNILLDENNEPVISEHGLSKFLDPNTSFLFSSHGYTAPEKSITEKGDVYSFGVILLELLTGKSIEVSRIDLAKWVRSMVREEWTGEVFDKEVRVNEHQWAFPLLNIALLCVSRFQENRPTTGEILEKIEQVMDEHEQHEERFASNTNWVLSEIQDKMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQTVNRQSGGIHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNFGLNRTSNFLNSYAQGFNMNPIGGYGVRMDGRFSPLTSGRSGFNPFGSSSFGMGMNMDSGLNPSFGGASGYGGNLGYGRMSPFYNGNSSRYTTPIGNNGGNGRSDSLANSASRSVWGNGGLNNAANNPVSPGAYLGSGSGAFGVSIGNNGTNWGPSVPNQGGGAASGYSTWGNTYESGDNSIGLGGGGYGRNSSPSLPQSSTFTAPTGGYEGSYGDLYRSGSVYSDAAWRSAASEIDASGSFGYGLGGIASDDPVKSSEGFIGNYSVTSRQPNRGIAA 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01995 1068 CDD RRM1_hnRNPA_hnRNPD_like 599 669 - -
Cca05g01995 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 699 757 IPR000504 GO:0003723
Cca05g01995 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 599 666 IPR000504 GO:0003723
Cca05g01995 1068 ProSiteProfiles Protein kinase domain profile. 303 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01995 1068 SUPERFAMILY L domain-like 62 189 - -
Cca05g01995 1068 SUPERFAMILY RNA-binding domain, RBD 696 807 IPR035979 GO:0003676
Cca05g01995 1068 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Cca05g01995 1068 SUPERFAMILY RNA-binding domain, RBD 589 695 IPR035979 GO:0003676
Cca05g01995 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 597 673 IPR000504 GO:0003723
Cca05g01995 1068 MobiDBLite consensus disorder prediction 673 696 - -
Cca05g01995 1068 Gene3D - 694 780 IPR012677 -
Cca05g01995 1068 Gene3D - 597 679 IPR012677 -
Cca05g01995 1068 MobiDBLite consensus disorder prediction 199 221 - -
Cca05g01995 1068 Gene3D Phosphorylase Kinase; domain 1 269 378 - -
Cca05g01995 1068 Gene3D Transferase(Phosphotransferase) domain 1 380 591 - -
Cca05g01995 1068 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 579 - -
Cca05g01995 1068 SMART rrm1_1 598 669 IPR000504 GO:0003723
Cca05g01995 1068 SMART rrm1_1 698 770 IPR000504 GO:0003723
Cca05g01995 1068 SUPERFAMILY Protein kinase-like (PK-like) 316 563 IPR011009 -
Cca05g01995 1068 Pfam Protein kinase domain 318 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01995 1068 Gene3D Ribonuclease Inhibitor 34 211 IPR032675 -
Cca05g01995 1068 PANTHER OS05G0588300 PROTEIN 18 579 - -
Cca05g01995 1068 CDD RRM2_DAZAP1 695 774 IPR034131 GO:0003723
Cca05g01995 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 697 774 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01995 Cca-Chr5 39846153 39853530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01995 15 569 Receptor kinase-like Gene Family AT5G53320 32.113 4.30e-70 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01995 Pkinase 7.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01995 K14411 - gmx:100807491 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01995 05 39846153 39853530 Cca05g01995 05 39846153 39853530 ECH