Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01991 ATGCCGGACCAAGATATTTGCAGTTACATTAACGAACCTCGTCTTGTGGCCAGAAAGTTCTTGGCCAGACCTCAACATGAAGGTGTTGGGGCAGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGTACTTTGATCCCTTCCTTGTCTTGGATGAATTCTCAGTCACTGCTCCTGCTGGGTTTCCTGATCATCCACACAGAGGCTTTGAGACGGTCACATACATGTTGCAGGGAGCTGTAACGCATGAAGATTTTGAAGGACATAAGGGGACAATTGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTCCAACTCTGGATAAACCTAGCTTCAAAAAATAAAATGATTGAGCCAAGGTACCAAGAAATGTTGAGCAAGGACATAGCTGAAACTATGGTAGATGGTATAAAAGTTAGGGTTATAGCAGGGGAAGCTCTTGGAGTAAAGTCAGCAATCTACACAAGGACACCAACCATGTATTTGGATTTTTCCCTTAAACCTGGGGCACACTTGCAACAACCTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTTTTTGGGAACAAAAAATCTCAACCTGTGACATCTCACCATATACTACTTCTTGGTTCTGGGGATGGCCTAGAAGCATGGAACAAATCTCCTAAGGTGCTTAGGTTCATTTTGGTTGGAGGGGAACCATTGGGTGAACCTGTGGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAAAACTATACCAATGGATTTGAGAAAGCAAGACATTGGAGGTCTGAAAGTGCACTTAGTCTTGATTTTTGA 906 0.4316 MPDQDICSYINEPRLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKNKMIEPRYQEMLSKDIAETMVDGIKVRVIAGEALGVKSAIYTRTPTMYLDFSLKPGAHLQQPIPKSWNAFVYILEGEGVFGNKKSQPVTSHHILLLGSGDGLEAWNKSPKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSESALSLDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01991 301 CDD cupin_pirin_N 31 128 - -
Cca05g01991 301 Pfam Pirin 33 126 IPR003829 -
Cca05g01991 301 PANTHER PIRIN-RELATED 8 297 IPR012093 -
Cca05g01991 301 PANTHER OS09G0484800 PROTEIN 8 297 - -
Cca05g01991 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Cca05g01991 301 CDD cupin_pirin_C 176 252 - -
Cca05g01991 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cca05g01991 301 PIRSF Pirin 12 292 IPR012093 -
Cca05g01991 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cca05g01991 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01991 Cca-Chr5 39808189 39811920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01991 13 289 Calmodulin-binding Proteins AT3G59220 58.065 8.13e-123 351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01991 05 39808189 39811920 Cca05g01991 05 39808189 39811920 ECH
Cca09g01152 09 32818774 32822447 Cca05g01991 05 39808189 39811920 PCT