LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01987	ATGAAGAGGGGTAGGGCTTCATCTTCAGATGATGAGTCTGGGACTGAGGCTGAGGAACAATCACTCTCTGTGTCTGATTATGACCTTGTAGACGATGACGACACGCCTGTATCTTTTGCTGCGTTGCCAATTCAATGGAGTGATTCTGAGAACTCTGATGATGCCAGCACAGGGAAGGTGTTCCTTCAGGGGCTTGTCGATGACGGGCTGCGGAAGTTTTTCACGCAAGTCACGGCGTGGAGATTTGATCTTTCCTGTACAAGACCCGAGATATTCTTGTTATCGAAGGATGGAAAGTGGATCGAGCTTCAAAAGCCCAGGAAGATATTTCAGGATACTATAAGGACCATTATGATCACCATTCACTTCCTGCATCGTGTCAAGAGAAAATGTCAAATGTCTGCGGCATCTGTTTGGCAAGACTTGTGTAAGGATAAGGAGTTGAGCTCTTATGGGGTTAAGCCTTCACAAAAAGATTTATTGGACCATTTGCCTTTGATTCGTGAAGCTTCCAAAAGGGATGCTGTCTTAGCTAAATCCAAGTTCTTGCTCATGGTTTTGGAGAAACCGAAGAGTCAAAAACTTATTGATAAGGAAGTTAATGATGTGACACGACCTGAACTTACAGTTGTTGGAATTGACAGAGATATGATAGATGAATATAATGAAGAGTTAGAAGAAAAGGATGATTTGGATGTTTGTGCAATTTGTGACAATGGTGGTAATGTTACGTGTTGTGATGGAGTATGCATGAGGTCATTTCATGCAACTGTGGAGGCTGGTAGAGAAAATAATTGTGTTTCTCTTGGTTTTACCCAGAAAGAAGTTGATGACATCCAGAACTTTTATTGTAAAAATTGTGAATATCATCAGCACCAGTGCTTTGCATGTGGCAAGCTGGGGTCTTCTGATAAAGTTAAAGGTGCTGAGGTTATTAAATGTTCTTCTGCGGCCTGTGACCGTTTTTATCATCCACATTGTGTTGCAAAGTTACTCTCCCAGGTAGTTAAGCATGTTGCTGAGGAACTTGAGAGAAATATTACTGATGGGGATCCTTTTACCTGTCCCCTTCATTTTTGCGGTGTCTGTAAAGAATTGGAAAATAAGAGGGATCCTGAGTTGCAATTTGCTGTTTGTAGACGATGTCCAAAGTCATATCATCGAAAATGTTTGCCAAGAGAAATTGCTTTTGGCAACAAAGGTGACGAAGGTATACAAAGGGCTTGGGAAGGTCTTTTACCAAATAACCGCATACTTATATATTGCTTAAATCATGAGATTGATCATGAACTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCAATTTAAAAGCTACTGTTCAAAAAATTAAAAATACTATTGAGCGGAAGAAACCTGCATCGAAAGAGAGGGCTATATTGAAGAAGAAAAATGTTGACTTTGATAATTCATCTAGCAAAAGCACTGCTAAGGGATCTAAATTGACTGGAAAAGTGTCTTCTGACAAATTTGATGGCAAGAAGTCTAATAAGGTGATTTCTGCTTCAAATATCTCTAGAAAGCCGAAATTGAAAGAAACATCAAGAAAGTGTTCAACTGAAAATAATAGGCCAATCTCAAAGAAATTTGAAAGGCCTGATTCTGAGAAAAACCATAACCAGCCTGCACTGGGTGAGAAATATGCTCTCAAACCTGTTAGAAAGCTGAGTATTGAATTGCCTCCATTAGATGCTGATTCAGAAAAGAGTTTGTTGGCTTTGTTTAAAGAAGCTAGATCATCAATTACAATGGAGAGTATCTTAGAAAAACACACATTTGATTCTACTCATACTCAGTCGTTGAAAAATGTTGTGGAGAAGACCATTACAATGGAGAAGCTGGAAGACTCGGTTGATGCTGTTCGATCAGCTTTAAGGAAGCTAGAGAACGGGTGCAGCATTCAGGATGTAAAAGCTGTTTGTGACCCTGATGTTCTGAAACAGATATTTATGTGGAAGATTGTTGATAAACTTCATTGGTATGTTCAGAACGGTGATATGATTGTGGACTTCTGCTGTGGTGCTAATGATTTTAGCATCCTTATGAAGAAAAAGCTGGAGGAAACTGTGAAGAAATGCTCATACAGAAACTATGATTTACTTCCTACAAAGAATGATTTTAGTTTTGAAAGGAGAGATTGGATGACTGTCCAACCAACTGAGTTGCCAACAGGGTCGCAGTTGATCATGGGGCTCAGACCACCCTTTGGGCATAAAGCAGCATTGGCTAACAAGTTCATAGATAAGGCTCTTGAGTTTAAACCAAAGCTCATAATTCTTATTGTACCCCCAGAGACAGAGAGGCTTGATAAAAAACCATCACCGTACGATCTTATATGGGAGGAAGAGAATTTTCTGTCAAGCACGTCATTTTATCTGCCTGGATCAGTTGAAGTAAATGACACACAAGTGGACCAAACGAATGAAAGGCCGCTTCTACTCTCTCTTTGGAGCCGTCCTGACTGGACTATTAAACACAAGATCATAGCCCAAGAGCATGGTCATGCGTGCAGCCAGAATAAAGTATTAGAGACACAAAGTTTTTATGCTGACATCATGCTGGATGCAAATTATGCTGCTGATGATCAAGCATCTAAGAAAGGCCAGCAAAGAAGTTCACATTGTGGTAATGCTGACGAAGAGAGTCAAAAGGGACAGCAATGTAGGACTGGCAAGTCACCAAGGAAGAGAAAACATATTGAGGAAAATAATAGAAAAAAACTAGGTGCGGTCCCACCAGCCAAAAGGCAGGCTCTAAATAAAATTCTTGAGGGAGGAGTCAATGGAAAATCCTCAGATGAAGCTCTTCAGCCCAAATCTACTTTGGCATATCCACGTGTTGAGGTTGCTCATAATCCTTCCTGTGGCCCCTTGGGAAGTAATAATGAGCAAGATGTTTCAGAAACAGAGTCATCTTGTAAGACGAATATACCAGTTATTGGACAATATGAACCTCGTCTATGCGAATTAAAACTTGTCAAAAGTTCTCTGGCTTCTGAAACTCGTCCATTAAGTAAAAGTGGACGTAGAAGTAGTAGCGTACCCAAACCTGTATATGGTGGCGGGATGCATTGTTTTGCTCCTGCTCTTAACTGTGAATATGCACGCCAGCATTCGTGTGGTTGGCTCGATGAGTAG	3159	0.4049	MKRGRASSSDDESGTEAEEQSLSVSDYDLVDDDDTPVSFAALPIQWSDSENSDDASTGKVFLQGLVDDGLRKFFTQVTAWRFDLSCTRPEIFLLSKDGKWIELQKPRKIFQDTIRTIMITIHFLHRVKRKCQMSAASVWQDLCKDKELSSYGVKPSQKDLLDHLPLIREASKRDAVLAKSKFLLMVLEKPKSQKLIDKEVNDVTRPELTVVGIDRDMIDEYNEELEEKDDLDVCAICDNGGNVTCCDGVCMRSFHATVEAGRENNCVSLGFTQKEVDDIQNFYCKNCEYHQHQCFACGKLGSSDKVKGAEVIKCSSAACDRFYHPHCVAKLLSQVVKHVAEELERNITDGDPFTCPLHFCGVCKELENKRDPELQFAVCRRCPKSYHRKCLPREIAFGNKGDEGIQRAWEGLLPNNRILIYCLNHEIDHELGTPVRDHIKFPNLKATVQKIKNTIERKKPASKERAILKKKNVDFDNSSSKSTAKGSKLTGKVSSDKFDGKKSNKVISASNISRKPKLKETSRKCSTENNRPISKKFERPDSEKNHNQPALGEKYALKPVRKLSIELPPLDADSEKSLLALFKEARSSITMESILEKHTFDSTHTQSLKNVVEKTITMEKLEDSVDAVRSALRKLENGCSIQDVKAVCDPDVLKQIFMWKIVDKLHWYVQNGDMIVDFCCGANDFSILMKKKLEETVKKCSYRNYDLLPTKNDFSFERRDWMTVQPTELPTGSQLIMGLRPPFGHKAALANKFIDKALEFKPKLIILIVPPETERLDKKPSPYDLIWEEENFLSSTSFYLPGSVEVNDTQVDQTNERPLLLSLWSRPDWTIKHKIIAQEHGHACSQNKVLETQSFYADIMLDANYAADDQASKKGQQRSSHCGNADEESQKGQQCRTGKSPRKRKHIEENNRKKLGAVPPAKRQALNKILEGGVNGKSSDEALQPKSTLAYPRVEVAHNPSCGPLGSNNEQDVSETESSCKTNIPVIGQYEPRLCELKLVKSSLASETRPLSKSGRRSSSVPKPVYGGGMHCFAPALNCEYARQHSCGWLDE	1052

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g01987	1052	SMART	PHD_3	233	288	IPR001965	-
	Cca05g01987	1052	SMART	PHD_3	360	426	IPR001965	-
	Cca05g01987	1052	SMART	PHD_3	293	359	IPR001965	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	1	30	-	-
	Cca05g01987	1052	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	291	380	IPR013083	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	516	548	-	-
	Cca05g01987	1052	Pfam	Cytosine specific DNA methyltransferase replication foci domain	22	135	IPR022702	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	870	922	-	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	456	476	-	-
	Cca05g01987	1052	Coils	Coil	618	638	-	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	456	548	-	-
	Cca05g01987	1052	PANTHER	PHD FINGER-CONTAINING PROTEIN DDB_G0268158	8	660	-	-
	Cca05g01987	1052	PANTHER	PHD FINGER-CONTAINING PROTEIN DDB_G0268158	661	929	-	-
	Cca05g01987	1052	MobiDBLite	consensus disorder prediction	902	916	-	-
	Cca05g01987	1052	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	229	290	IPR013083	-
	Cca05g01987	1052	PANTHER	ENHANCED DOWNY MILDEW PROTEIN	8	660	-	-
	Cca05g01987	1052	PANTHER	ENHANCED DOWNY MILDEW PROTEIN	661	929	-	-
	Cca05g01987	1052	CDD	PHD2_NSD	293	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01987	Cca-Chr5	39733103	39745200	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g01987	-		-	gmx:100806429	1444.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g01987	05	39733103	39745200	Cca05g01987	05	39733103	39745200	ECH
	Cca09g01143	09	32692262	32718265	Cca05g01987	05	39733103	39745200	PCT