Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01986 ATGGGGTTCTCGGTAACCACGTTAATTTTCGTAGGGATTGGAATCGTCGCGTCACTTTGCACCAGAATTTGTTTCAACAGAGGACCTTCCGCGAATCTATTTCACTTAACTTTGGTTCTTACTGCAACAATATGCTGCTGGATGATGTGGGCGATTGTATATCTGGCACAGATGAAACCGCTCATAGTACCTATCCTGAGTGAGGGTGAATAA 213 0.4413 MGFSVTTLIFVGIGIVASLCTRICFNRGPSANLFHLTLVLTATICCWMMWAIVYLAQMKPLIVPILSEGE 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01986 70 Pfam ATP synthase subunit H 3 67 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cca05g01986 70 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT H 1 70 IPR008389 GO:0033179|GO:0046961|GO:1902600
Cca05g01986 70 PANTHER V-TYPE PROTON ATPASE SUBUNIT E2 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01986 Cca-Chr5 39727174 39728981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01986 1 70 Primary Pumps ATPases(2) AT5G55290 80.000 7.33e-38 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01986 K02153 - gmx:100798558 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01986 05 39727174 39728981 Cca05g01986 05 39727174 39728981 ECH