Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01984 ATGGATGTGTTGGAATCCAACAGAACAAAATTCATTGAGAAAATGTCCGAAAAGGACAGCGAAAACGACGCCGTGGTGAATGAAGTATCAGAAACCTTTCACCTTCCACAATCCCACCAGGTAAACGGCGGTGACAGTTGGTGGGTGGCGCCAAAAACAGGACCAATGGCGTCTTCTTCAGACTCGTGGGTGAAGGAATATAATGGAGCACTGAAACTTGCTGATGATGTCAGCGGTATGATTTCTGAGGGGGGTTCATTTCCTGCATCTGGACCAGAAACCCAGCGTCATTCATCTGCTATAAGAAGGAAGATTACTATATTGGGGACCAGGCTTGATAGCTTGCAATCTCTTTTGTCCAAGCATCCCGGAAAGCATCCCATAACTGATAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAATTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTGCAAATAGAGATAGTTTGCTTGGGCCAGAAAGAAAACCAGATGCAATGACCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAACGTCAAATTATGAAAGAACAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAGCAAGCACAAAACATATTGCATTGGCAGTGAATGAAGAGCTGGATCTGCACACTAGACTCATTGATGACTTGGATCAACATGTAGATGTCACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAACCAAGGGTGGTTGCTCCTGCCTGTGCATGCTTTTATCTGTTGTTGGTATAGTGCTTTTGCATCATAACCGGGTTTCCGGGTTTCCTGATTTCTCTTGGTACTTTTCCAATGTCATGGAATTTGTTGAGGTGGTGAAAGGTGTTGTATTGTAA 921 0.4387 MDVLESNRTKFIEKMSEKDSENDAVVNEVSETFHLPQSHQVNGGDSWWVAPKTGPMASSSDSWVKEYNGALKLADDVSGMISEGGSFPASGPETQRHSSAIRRKITILGTRLDSLQSLLSKHPGKHPITDKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPERKPDAMTRTVGLDNNGLVGLQRQIMKEQDDGLEKLEETVASTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVVGIVLLHHNRVSGFPDFSWYFSNVMEFVEVVKGVVL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01984 306 Gene3D - 193 255 - -
Cca05g01984 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 191 253 IPR000727 -
Cca05g01984 306 Pfam SNARE domain 228 276 IPR000727 -
Cca05g01984 306 SMART tSNARE_6 186 253 IPR000727 -
Cca05g01984 306 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 56 274 - -
Cca05g01984 306 CDD SNARE_Qc 194 251 - -
Cca05g01984 306 PANTHER SYNTAXIN 56 274 IPR045242 -
Cca05g01984 306 SUPERFAMILY SNARE fusion complex 182 252 - -
Cca05g01984 306 SUPERFAMILY t-snare proteins 86 155 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01984 Cca-Chr5 39717368 39719795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01984 56 274 SNARE and Associated Proteins AT1G16240 71.364 1.37e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01984 K08503 - gmx:100782666 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01984 05 39717368 39719795 Cca05g01984 05 39717368 39719795 ECH
Cca09g01139 09 32597506 32602812 Cca05g01984 05 39717368 39719795 PCT