Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01980 ATGGAAGACGACGTCGTCCCCGATCCCCAATCGGAGGACTCCCTCTCCGACGAGCGCCGCGCCAAGAAGCCTAAGGTTGACGACGCTCAGCTCAAGCGAGTCGCCGAGATTGTACTCGTCCTCTCCACCATGGCCACGGTGCGCGCCGGGAGAAAACCCTCCGACGTCGAGGTCGACCTCATGAAGGAAGCTCGCGCCAAGCTCGCCGGCCTCTGCGAGGGTTTGGCTCCCAAGGACATCGTCGCCAGGGAAGCCGTCGGCACCGTCATCGAGGATCTCGGATTGCACTCCAAGCTCAAGGACCAGAGGCTAGGGTTTCGCGCTCCTAAGATGTCCATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTGCTGCATCTTCTACTCCTTCCACAACACATACATCTCAGCCCTTGCAAGCAAACATTGGCGGACCAGTTGACAATCGTGTGCCATCACCTGTTGTTAGAATGTTTCCGTCCGATAAATCAAGCCACCCGGCAATCTCTTCTATGGGTACTGTAGTGTCTATTCCTGCCCATGTTTCTGCAGGGTCTTCTGCAGCATTGCAATATCAATCAACTGGAAATGAAGTAAGACCGCCAGTGGTTTCTGGTATGATACCTATCAGTCACTTGGGGAGAAATCCATCTTCTGCAGTATTGCCTAAAGTTGAACACTCGCAGTTCAGAGTTGATGCAGGATCAAATGGGGCTTCTTATATAATGCAAGTCCAAGCAAATTCGTCAGCAAACCAGCCTTTGGTGAATGCTCCATCATGGTCTATGCAGACTCAAGCTGCTTCATTAACTAGAAGTGCATCAGAAAACAAGGTGCCTGCTCATAACTCTGTCAAGGTTGAAGGCACACCTGGCATTACTGTAACAAGGACAGGGCCACAAATAACAACAGATCCAAGCTTTAGACCATTTATCACTCAAACAGCCCCTGGAAATTTGCCTAGTATGCACCAGCCATTGCAGGCCACAAACATTGTTCAGCCTCCTTTGATTCCTAGTCACAGTGATATTGGAAAGATTGTACAGAAAGTGTTACAACCAAAGCATCCTGACCATCCCATGTGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAAATGTGTGAGCTTAGTGTCAATGAGGTTGATACTGTACTTCTCTGTGACGCCTGTGAAAAGGGATTTCATTTGAAGTGCCTACAGCCATCAGTCTTGAGAGGAATCCATAATAGAGTGGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCATCAAACACACCACCTAAATTGCCCTCTAATACAGGTGGTATTCAACCATGTTCTGAGAAGAAAGCAGAGAACATAGATCCGAAGGTCTTCTCACAGATGTTAACAACAAATGGGAGCTCCATTTCAACTGTTTCCAGTGGTAATCACAATGCTGAGCTGCTATCTGACTCAAAAATCCCATATACCAAAGATATGCAAGGGATTGGCATTTCATCCAGCATTGAAGCTATTGATGGGATGCCTGATCCAAACAACACTGTGAAATCTCTTAGTGCAGCAGCTTCCAGTCCTTCCACTGGCTTGCTAGGTGAAAGTTCTGCTCAACAAATAAATTCTAAGGTTTTGACTGGCACAGAGACTTCAGAATTTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAATCATCACAAGATTTTCAAGTTGAACAGACAATGTCACAAGACAATGAAGTATCATCAGATAAACACTCTGACAGCAATATTATGAATAAAAAACAGATGGAATCTCATGGAGGAGAAAATTTAACTTACGATATCAAGCGTGATGACCAAGCTGCCGCACTTGCAAATGTTGTAGGAACTTCTGAAACTAATACCGAAGGTAGACAGCACTCTGCATTATCTTCAGATAGCTCACATGTTGTAGAATGGATTGGTGATGTAGTGCAACTCGTAGATGAAAAAAAGTTTTATCAATCTTGCTGTGTTGATGGAGTAACATATAGGCTGCAGGGTCATGCTCTTTTCTCCACCAGCCATGGCAAACTAACTCCTTCTAAACTCCAGTCTATGTGGGAAGACTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGACTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTAAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACTAGAAAATGAAAGGCGATGTCAGTTAGGAATTGAGGAAAGTTCTAGAGTACAACCCATTTTCCTTTGCAGGTGGTTTTATGATGAATTCAAAAAGTTATTTCAACCTGTAACCAGTTGA 2463 0.4474 MEDDVVPDPQSEDSLSDERRAKKPKVDDAQLKRVAEIVLVLSTMATVRAGRKPSDVEVDLMKEARAKLAGLCEGLAPKDIVAREAVGTVIEDLGLHSKLKDQRLGFRAPKMSIAERYSHAKWKMEEAKKFAASSTPSTTHTSQPLQANIGGPVDNRVPSPVVRMFPSDKSSHPAISSMGTVVSIPAHVSAGSSAALQYQSTGNEVRPPVVSGMIPISHLGRNPSSAVLPKVEHSQFRVDAGSNGASYIMQVQANSSANQPLVNAPSWSMQTQAASLTRSASENKVPAHNSVKVEGTPGITVTRTGPQITTDPSFRPFITQTAPGNLPSMHQPLQATNIVQPPLIPSHSDIGKIVQKVLQPKHPDHPMWTPPSRDYMNKALTCQMCELSVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPCSEKKAENIDPKVFSQMLTTNGSSISTVSSGNHNAELLSDSKIPYTKDMQGIGISSSIEAIDGMPDPNNTVKSLSAAASSPSTGLLGESSAQQINSKVLTGTETSEFESLPKLSEPAKCENLQSSQDFQVEQTMSQDNEVSSDKHSDSNIMNKKQMESHGGENLTYDIKRDDQAAALANVVGTSETNTEGRQHSALSSDSSHVVEWIGDVVQLVDEKKFYQSCCVDGVTYRLQGHALFSTSHGKLTPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIRGPCEVLPSDKFKLENERRCQLGIEESSRVQPIFLCRWFYDEFKKLFQPVTS 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01980 820 ProSiteProfiles Zinc finger PHD-type profile. 379 432 IPR019787 -
Cca05g01980 820 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 819 - -
Cca05g01980 820 ProSiteProfiles BAH domain profile. 692 819 IPR001025 GO:0003682
Cca05g01980 820 Pfam PHD-finger 382 430 IPR019787 -
Cca05g01980 820 MobiDBLite consensus disorder prediction 12 27 - -
Cca05g01980 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 443 IPR013083 -
Cca05g01980 820 MobiDBLite consensus disorder prediction 133 153 - -
Cca05g01980 820 ProSitePatterns Zinc finger PHD-type signature. 382 429 IPR019786 -
Cca05g01980 820 SUPERFAMILY FYVE/PHD zinc finger 372 437 IPR011011 -
Cca05g01980 820 MobiDBLite consensus disorder prediction 281 313 - -
Cca05g01980 820 MobiDBLite consensus disorder prediction 602 616 - -
Cca05g01980 820 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 819 - -
Cca05g01980 820 MobiDBLite consensus disorder prediction 595 624 - -
Cca05g01980 820 Gene3D - 671 820 IPR043151 -
Cca05g01980 820 MobiDBLite consensus disorder prediction 1 27 - -
Cca05g01980 820 CDD BAH 691 819 - -
Cca05g01980 820 MobiDBLite consensus disorder prediction 536 555 - -
Cca05g01980 820 SMART PHD_3 381 430 IPR001965 -
Cca05g01980 820 MobiDBLite consensus disorder prediction 295 313 - -
Cca05g01980 820 MobiDBLite consensus disorder prediction 133 149 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca05g01980 PHD 1.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01980 - - gmx:100807139 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01980 05 39682240 39690816 Cca05g01980 05 39682240 39690816 ECH