Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01974 ATGGAATTGTTTCCTCGAGCAATGACTTTCTTTCTAATTTTTTTTATTAGTTATTTCTTTTGTCTTGGTAAAGCCATAGATTGTGGTGGGAAGAGTGTTTCATATACTATCTATGTTGATCAATCTGGCAAAGTTGGATTTAGAACAATTCAAGCTGCCATTGATTCTATAAAGTGGAATAATAATCAATGGGTCAAAATTCACATAAAAGCTGGATTATACATGGAAAAAGTTCAAATTCCCGCAGAAAAGCCATGCATCATCTTAGAAGGAGAAGGTAATCAATATACAATCATAAGTTTCTATGGCCACGACACAACAAACAATAGTGCTACATTCACTTCATCGGCATCCAATGTGTTTCTGACTAAGATTGCTTTCAAGAACTCATATAATACCGGAAGTAAAGGCCAAAAAATATTTCCAGCAGCGGCAGCACTAATACAAGGAGACAAATCTTACATCTATGGGTGCAAATTTATAGGTTATCAAGATACTTTATTTGATGCACTTGGACGTCATTACTATAAAGATTGTGACATTCAAGGTGAAGTGGACTTTATTTTTGGTTTTGCACAATCTTACTTTGAGAATTGTTCCCTCTATGTTATAGGGAGAAATGCAGCCGGTTATGTCACAGCTCAAGGGAGAGATTCACCCAATAGTCCAAGTGGTTTTGTATTTGAAGGGGGTAACTTAATGGGAAATGGTAAAGTGAATTTAGGAAGAGCATGGCGTGCTTACTCAAGAGTCATATTTCATAAAACATATTTTTCTTCGGTGGTAACTCCTCAAGGATGGAATAATTTCGGTCGTGTTGGTCAAGAGGATAATTTTACTTATGCTGAAGTTGATTGTAAAGGACCAGGAGCTGATACTTCAAAGCGTGTTCCATGGATAAAAAAGTTGAATCCATCACAATTAGAAGAATTTTCTTTAACATCTTTTATCAATAAAGATAATTGGATTGACAATTTACCAAATATCTTCTAA 993 0.3494 MELFPRAMTFFLIFFISYFFCLGKAIDCGGKSVSYTIYVDQSGKVGFRTIQAAIDSIKWNNNQWVKIHIKAGLYMEKVQIPAEKPCIILEGEGNQYTIISFYGHDTTNNSATFTSSASNVFLTKIAFKNSYNTGSKGQKIFPAAAALIQGDKSYIYGCKFIGYQDTLFDALGRHYYKDCDIQGEVDFIFGFAQSYFENCSLYVIGRNAAGYVTAQGRDSPNSPSGFVFEGGNLMGNGKVNLGRAWRAYSRVIFHKTYFSSVVTPQGWNNFGRVGQEDNFTYAEVDCKGPGADTSKRVPWIKKLNPSQLEEFSLTSFINKDNWIDNLPNIF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01974 330 SUPERFAMILY Pectin lyase-like 33 326 IPR011050 -
Cca05g01974 330 PANTHER PECTINESTERASE 1 329 - -
Cca05g01974 330 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 329 - -
Cca05g01974 330 Pfam Pectinesterase 37 319 IPR000070 GO:0030599|GO:0042545
Cca05g01974 330 Gene3D - 30 328 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01974 Cca-Chr5 39613445 39617039 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01974 27 276 Carbohydrate Esterase AT2G19150 47.843 1.71e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01974 - - gmx:100787453 416.772