Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01972 ATGCTCCTAAAACTCACTCAACACATATCCTCTGTTATGGAATTGTCTCCTAGATCAATAGCTTTCATTTTAATCTTATTTATTAGCTATTTCTTTTGTTTTGGTGTCGCTGTAGATTGCGGTGGGAAGAATGTTTCATATATCATTACTGTTGGTCGATCTGACAAAGTGACGTTTAGAACAATTCAAGTTGCCATTGATTCTATAAAGAGTAACAATGATCAATGGGTCAAGATTCACATAAAAGCTGGCTTATATATAGAAAAAGTTCATATTCCTCTAGAAAAGCCGTGCATCATTTTAGAAGGAGAAGGCAGTCAAACTACAATCATAAGTTTCTCAGATCACTCCTCATTCAAACAAGGAACAAGTCAAAGTGGTACATTCATTTCCTCGTCATCCAATGTGATTGCAAGTGACATTACTTTCAAGAACTCATATAATATAGACGATAAGGGAAGCAATCAAATATTACCAGCAGTGGCGGCAACAATATATGGAGACAAATCTTTCTTCTTTAGGTGTAGTTTTGTAGGCTATCAAGATACTTTATTTGATGTGGGTGGACGCCATTATTTTAAAGATTCTTACATTCAAGGCGAAGTTGATTTTATTTTTGGTAATGGACAATCTTATTATGAGAATTGTTTGATTAATGCTATTGGAAGAAATAGAAAATTACCAGGTTTTGTCACGGCTCAAAGCAGAGACTCATCAAATGATCCAGGTGGTTTTGTATTTGAAGGGGGTTCTGTTATAGGAAATGGTGAAGTAAATTTAGGAAGGGCATGGCGTGCTTACTCTAGAGTTATATTTCATAATACAAACTTTTCTTCGATAGTAACCCCTCAAGGATGGAATGCGGCAAGTTATGGTGGCCAAGAGAATAAGTTTACTTATGCCGAAGTTGATTGTAAAGGACCTGGGGCTGATACTTCAAAGCGTGTTCCATGGACGAAAAAATTGAGTTCTTCACAGATGAAAGAATTTTCTTTAGCATCTTTTATCAATAAAGATAGTTGGCTTGATAATTTACCAACTATCTCCCAGTAA 1053 0.3552 MLLKLTQHISSVMELSPRSIAFILILFISYFFCFGVAVDCGGKNVSYIITVGRSDKVTFRTIQVAIDSIKSNNDQWVKIHIKAGLYIEKVHIPLEKPCIILEGEGSQTTIISFSDHSSFKQGTSQSGTFISSSSNVIASDITFKNSYNIDDKGSNQILPAVAATIYGDKSFFFRCSFVGYQDTLFDVGGRHYFKDSYIQGEVDFIFGNGQSYYENCLINAIGRNRKLPGFVTAQSRDSSNDPGGFVFEGGSVIGNGEVNLGRAWRAYSRVIFHNTNFSSIVTPQGWNAASYGGQENKFTYAEVDCKGPGADTSKRVPWTKKLSSSQMKEFSLASFINKDSWLDNLPTISQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01972 350 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 348 - -
Cca05g01972 350 SUPERFAMILY Pectin lyase-like 46 345 IPR011050 -
Cca05g01972 350 PANTHER PECTINESTERASE 13 348 - -
Cca05g01972 350 Pfam Pectinesterase 49 338 IPR000070 GO:0030599|GO:0042545
Cca05g01972 350 Gene3D - 48 349 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01972 Cca-Chr5 39551562 39554046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01972 49 342 Carbohydrate Esterase AT1G05310 40.134 9.18e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01972 - - var:108336510 426.787