Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01970 ATGTCAGCTCCAACACGACATCATGCTCTCTGCATTACCAGTTCCAAGGTTAGCCGCTCAGTTGTCAACCATGCAACTGATGAGAGCTTCGTCGTGCTAAACAAAGAACAACTAAATGAACATCAAGAATGTGTTAGTTGTGGCATTAGAAATTTACTTTTGCGGTGGAGGAGTTATTTCTTTTGCCTTGGTGAAGCCATAGATTGTGGTGGAAAGAATATTTCATATACCATCACTGTTGGTCAATCTGGCAAAGTAACATTCAGAACAATTCAAGCTGCCATTGATTCTATTAAAAGTAAGAATGATCAATGGGTCAAGATTCACATAAAAACTGGCTTATACATAGAAAAAGTTCATATTCCTATTGAAAAGCCATGCATCATTTTAGAAGGAGAGGGTAGTCAAAATACAATCATAAGCTTCTCGGATAACAAAGGAACAAGCAGTAGTGCTACATTCGTTTCATCGCCACCCAATGTGGTTATGAGTGACATTACTTTCCAGAACACGTATAATGTGAACAACAAAACCCAAAAAGTATCTCCAGCAGTTGCAGCATTAATACAAGGAGATAAATCTTTCATCTTTAGGTGCAGTTTTATAGGTTATCAGGACACTTTATTTGATGCATATGGGCGTCATTATTATAAGGATTGTTACATTCAAGGTGAAGTGGACTTTATTTTTGGTAGAGCACAATCTTACTATGAGGCTTGTACCATTAATGCTACACAAGAAAAACCTTCTTCAACGGGTTTTGTAACGGCCCAATCCCGATATTCAGAAAAGGACACAAGTGGCTTTGTTTTCAGAACAGGTAGTGTAACTGGAAGTGGTGAAGTGAATCTTGGAAGAGCATGGGGACCTTATTCAAGAGTTATATTTTACGGAACATATTTTTCTTCAATAGTATCTCCTCAAGGATGGAATGCTTGGAATTACAGAGGCCAAGAGTCCAAACTTACTTATGCTGAGGTTGACTGCACCGGACCAGGTGCAAACACTACAGAACGTGTTCAATGGAGAAAAAACCTCACTAATTCGCAGTTAAATGAGTTTTCTTTATCATCTTACATCAACAAAGATGGGTGGCTTTCCAACTTACCAATTAAATTTTAG 1122 0.3806 MSAPTRHHALCITSSKVSRSVVNHATDESFVVLNKEQLNEHQECVSCGIRNLLLRWRSYFFCLGEAIDCGGKNISYTITVGQSGKVTFRTIQAAIDSIKSKNDQWVKIHIKTGLYIEKVHIPIEKPCIILEGEGSQNTIISFSDNKGTSSSATFVSSPPNVVMSDITFQNTYNVNNKTQKVSPAVAALIQGDKSFIFRCSFIGYQDTLFDAYGRHYYKDCYIQGEVDFIFGRAQSYYEACTINATQEKPSSTGFVTAQSRYSEKDTSGFVFRTGSVTGSGEVNLGRAWGPYSRVIFYGTYFSSIVSPQGWNAWNYRGQESKLTYAEVDCTGPGANTTERVQWRKNLTNSQLNEFSLSSYINKDGWLSNLPIKF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01970 373 Gene3D - 71 373 IPR012334 -
Cca05g01970 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 371 - -
Cca05g01970 373 PANTHER PECTINESTERASE 52 371 - -
Cca05g01970 373 SUPERFAMILY Pectin lyase-like 75 371 IPR011050 -
Cca05g01970 373 Pfam Pectinesterase 78 362 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01970 Cca-Chr5 39514034 39535408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01970 68 319 Carbohydrate Esterase AT2G19150 47.451 1.50e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01970 - - gmx:100787453 420.239