Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01966 ATGCGGCGGGGTAGAGGAGGACCCACGGCGGTGGAGGCCAACGGATCCGTTTTAAAGGAGCCGCGCTACCGCGGCGTTCGGAAGAGACCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCTCGAGTGTGGTTGGGAACATTCGATTCGGCGGAGGAAGCCGCACGCGCCTACGACGCCGCCGCTCGGAGTCTCCGAGGTCCGAAGGCGAAAACAAATTTCCCTCTCTCGCAGTTGTGTTACCAACAACAGCAAAACCCAACAACCGATGCTTTCTTCTactacgaccacagcagcaacaacaacaacaacaacaacgttaacaacCCTCAGAGGCCCACATCGAGTGGGATGAGTAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACTGCGACGCCGTTTTTGGCCGCCACGCGGAGGTACCCGCGCACTCCCCCACTTGTCCCCGAAGACTGCCACAGCGACTGCGACTCCTCCTCCTCCGTCGTGGACGACGGCGACGACAACATCGTCTCCTCCTCGTTTCGGCCTCCCTTGCCCTTTGATCTCAACGCGCTGCCGTTTGACGATGCGGACGACGACCTCCGCTGCACCGCGCTTTGTCTCTGA 627 0.5742 MRRGRGGPTAVEANGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARSLRGPKAKTNFPLSQLCYQQQQNPTTDAFFYYDHSSNNNNNNNVNNPQRPTSSGMSSTVESFSGPRPPTATPFLAATRRYPRTPPLVPEDCHSDCDSSSSVVDDGDDNIVSSSFRPPLPFDLNALPFDDADDDLRCTALCL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01966 208 MobiDBLite consensus disorder prediction 154 182 - -
Cca05g01966 208 MobiDBLite consensus disorder prediction 102 140 - -
Cca05g01966 208 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 187 - -
Cca05g01966 208 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 MobiDBLite consensus disorder prediction 102 132 - -
Cca05g01966 208 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Cca05g01966 208 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Cca05g01966 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 187 - -
Cca05g01966 208 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01966 Cca-Chr5 39485010 39487269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01966 1 208 AP2-EREBP Transcription Factor Family AT1G50640 60.262 9.52e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca05g01966 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01966 K09286 - gmx:100803943 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01966 05 39485010 39487269 Cca05g01966 05 39485010 39487269 ECH
Cca09g01126 09 32385168 32386118 Cca05g01966 05 39485010 39487269 PCT