Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01960 ATGGAACCCACTTGGAATGATGCCATTGTGAAGGCTAATTCCTCTGATCCAATCATGTCCTTTAGAGGGACCCCACTCGTCTTGGATGAGCTTGATTTCTTCGCTGAGAAGAGAAAAGAGAGTGATGAAGATGAAATTGATGATCAAATTGTGGAGCTTCATGTTGATACTAGCTTGGATCTTCTTACTAAGAATAATACTGGTGCCATTAGATCAACAGAAGTAGTTGCAGCATTGGAAACTATGGATGATAAGAGAAGCGAGTTTGTAGCTTTGGTAACTGAATTGCACCAAATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTACAATGCCCTACACATGCAGCTTATCAAGCTAACGCAGAAGCAGCATAGCCATGGGAACAAGGGAGTGATAGGGGAGAAAGAAGAGATGGTTCCAAGGTCATTTTTGGACATGGGTGTTGGAGAGAAGGATGAGGGTTCCCAGCAATCCTCAGAGGGAAAACTGATGGATCAGTGCAAGGGACATGGCAAAGATGTTTTGGATGCAGATAATAATAAGTTGGATTCTGGAAGGGAAAGTTCAAAAGCTAGAATGCTTGCTGACCAAGAATTATCTACCAAAGTTCCTAGGTTGGATCCAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAGATCAGATTCCTCAATGATTGCTGATGGATGCCAATGGAGAAAGTATGGACAGAAGATGGCAAAAGGGAATCCTTGTCCAAGAGCTTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGAGGAAACAAGTACAAAGGTGTGCTGAAGATAGAAGTGTGCTGATCACTACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAGCTCAGGCAATGGCATCAACCACTTCTGCAGCAGCCTCAATGCTTCTCTCTGGGTCAATGCCAAGCTCAGATGGCCTGATAAACCCAAGCATATTGGAAAGTGCTTCACTTCCATGCTCTCAAAACATGGCCACACTCTCTGCCTCAGCCCCATTTCCCACCATCACACTTGACCTCACTCAAAATGCCACCAACCCCTCACAGCTCCAAAGGGAACCACAGGGTCAACTCAGCCTCCTTTCTCCACTTTTGGCCCACAAGTTCATGTCAGTTCCAAAAATATTTGGACAGTCACTGTGTGATCAAACCAAGCTTGCTGGCTTGCATGAGTCTCAGGGAATGGACACAACTTCATCATTTGCTAACACATTGAATGCTGCAACTGCTGCTATCACTGCAGACCCAAATTTTACTGCAGCTCTTGTGGCAGCCATAACGTCTGTCATTGGAAGTTCACATTCCAACGCCAGTGGCACCAATAACACAAGTGGAGATGAGCAGTGCAATAACAATGCATGA 1428 0.4468 MEPTWNDAIVKANSSDPIMSFRGTPLVLDELDFFAEKRKESDEDEIDDQIVELHVDTSLDLLTKNNTGAIRSTEVVAALETMDDKRSEFVALVTELHQMNAENQRLRELVDQVNNNYNALHMQLIKLTQKQHSHGNKGVIGEKEEMVPRSFLDMGVGEKDEGSQQSSEGKLMDQCKGHGKDVLDADNNKLDSGRESSKARMLADQELSTKVPRLDPASETMSMIKKARVSVRARSDSSMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILESASLPCSQNMATLSASAPFPTITLDLTQNATNPSQLQREPQGQLSLLSPLLAHKFMSVPKIFGQSLCDQTKLAGLHESQGMDTTSSFANTLNAATAAITADPNFTAALVAAITSVIGSSHSNASGTNNTSGDEQCNNNA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01960 475 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 10 462 - -
Cca05g01960 475 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01960 475 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01960 475 MobiDBLite consensus disorder prediction 456 475 - -
Cca05g01960 475 MobiDBLite consensus disorder prediction 173 201 - -
Cca05g01960 475 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01960 475 MobiDBLite consensus disorder prediction 156 208 - -
Cca05g01960 475 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01960 475 Pfam WRKY DNA -binding domain 242 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01960 475 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 462 IPR044810 GO:0003700
Cca05g01960 475 Coils Coil 96 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01960 Cca-Chr5 39409758 39413205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01960 27 463 WRKY Transcription Factor Family AT1G62300 47.589 1.95e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01960 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01960 - - gsj:114372133 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00995 09 29889057 29891814 Cca05g01960 05 39409758 39413205 PCT