Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01959 ATGCGCGAGGCAGCGTGTTTTGCCTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGTTGCCTCGGTCACGCTCTGTTCAAAATTGAGCGGCCCTTTGCGTGTACTGTTGATGATTGTCAGGCAAATTACAGAAGGAAAGACCACCTGACTCGGCACCTTCTACAGCATCAAGGGAAGACTTTTAAGTGCCCTGTTGAGAATTGCAACATTGAGTTCTCTTTGCATGGCAATATGAAAAGGCATGTTGAGGAGATTCATGATGATAGTTCTACCTCTATTTGGGACAAAAGTCCTAAACAGTTTGTGTGTTCAGAGATTGGTTGTGGAAAGGTTTTCAGATATGCATCACGGCTACAAAAGCATGAAGGTTCTCATGTTAAGCTGGAGTCAGTAGATGTGATGTGCTTAGAACCTGGTTGCATGAAACATTTCACTAATGTTCAGTGCCTTCAAGCCCATGTTAAATCCTCCCATCAATATAAAACCTGTGACATTTGTGGGACTAAGCAACTGAAGAAAAATATTAAACGGCACCTTCGTTCACATGAAGCCAGCAGTTCATCGGAGACCTTTCAATGCGAGTTTAAGGGTTGTTGCTGCACATTCTCCACAAAATCTAATCTTGATAAGCATAAGAAGGTTGTGCATTTTAAGGAAAAGCCTTTTGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCACGAAAAAACTGCCAAGCATGTTTTTACTCTTGTAAGTTCTTTTACCTCGTTGTTTCAGATGTGA 807 0.4226 MREAACFALMDQYQVGRPPVKLHQGCLGHALFKIERPFACTVDDCQANYRRKDHLTRHLLQHQGKTFKCPVENCNIEFSLHGNMKRHVEEIHDDSSTSIWDKSPKQFVCSEIGCGKVFRYASRLQKHEGSHVKLESVDVMCLEPGCMKHFTNVQCLQAHVKSSHQYKTCDICGTKQLKKNIKRHLRSHEASSSSETFQCEFKGCCCTFSTKSNLDKHKKVVHFKEKPFVCGFPDCGMRFAYKHVRDNHEKTAKHVFTLVSSFTSLFQM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01959 268 SUPERFAMILY beta-beta-alpha zinc fingers 65 93 IPR036236 -
Cca05g01959 268 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Cca05g01959 268 Pfam Zinc finger, C2H2 type 38 62 IPR013087 -
Cca05g01959 268 Pfam Zinc finger, C2H2 type 107 131 IPR013087 -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 69 92 IPR013087 -
Cca05g01959 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 67 IPR013087 -
Cca05g01959 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 227 IPR013087 -
Cca05g01959 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 97 IPR013087 -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 40 62 IPR013087 -
Cca05g01959 268 Gene3D Classic Zinc Finger 226 251 - -
Cca05g01959 268 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 33 256 - -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 109 131 IPR013087 -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 141 164 IPR013087 -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 230 254 IPR013087 -
Cca05g01959 268 SUPERFAMILY beta-beta-alpha zinc fingers 179 232 IPR036236 -
Cca05g01959 268 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Cca05g01959 268 Gene3D Classic Zinc Finger 198 225 - -
Cca05g01959 268 SMART c2h2final6 139 164 IPR013087 -
Cca05g01959 268 SMART c2h2final6 197 222 IPR013087 -
Cca05g01959 268 SMART c2h2final6 67 92 IPR013087 -
Cca05g01959 268 SMART c2h2final6 228 254 IPR013087 -
Cca05g01959 268 SMART c2h2final6 38 62 IPR013087 -
Cca05g01959 268 SMART c2h2final6 107 131 IPR013087 -
Cca05g01959 268 SMART c2h2final6 167 188 IPR013087 -
Cca05g01959 268 Gene3D Classic Zinc Finger 64 102 - -
Cca05g01959 268 Gene3D Classic Zinc Finger 30 63 - -
Cca05g01959 268 PANTHER ZINC FINGER PROTEIN 33 256 - -
Cca05g01959 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 136 IPR013087 -
Cca05g01959 268 Gene3D Classic Zinc Finger 103 168 - -
Cca05g01959 268 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01959 Cca-Chr5 39404544 39406948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01959 34 261 C2H2 Transcription Factor Family AT1G72050 50.357 1.29e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g01959 zf-C2H2 0.013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01959 K09191 - gmx:100801812 412.149