Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01955 ATGGCCAATTTGCCCCAATCCATCTCCATGAGCGCCGCCTCCTTTGGTGCTCCTTCTGCCTCCGCCACCAAGGATCGCCGAATGGCCTCCGTCGAACACCTCGTCCTCGAACTCAGCAACCCCGATCTTCGGGAAAACGCTCTCCATGAACTCTCCAAGAAGAGAGAGTTATTTCAGGATCTCGCTCCATTATTGTGGAATTCCTTTGGTACTATGGCAGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTATTTCCCCACCAAACCTTACTCCGGCACAATCCAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCATCTCACCTTGATACAAGGATGCAGTTCCTCAATGCTCATATACCTTTATATCTGTATCCTTTCCTTAATACAACAAGTAAGTCAAGACCATTTGAGTATTTGAGGCTTACCAGTCTTGGAGTCATTGGTGCCTTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGTTGTGCCTTCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTGTTGCAACCTTTATAGTTCAAAAAATCCTGTTGGACGAAATTGGTTTGAAATATATTTGTACTACAGCCGAGCGCTTTTATGCAGTGGGCCGAGTTTTGGGAAACATGGTGGCAACTCTTGTGGAGCAACCTTCATGTCGTCTTTTGAAGCATATCATTCGTTGTTATCTTCGTCTGTCAGATAATCAGAGTGCTTGCGAGGCATTAAGAACCTGTCTTCCAGACATGTTGAGAGATGCTACATTCAGTAGTTGCCTTCGTGAAGACCCAACAGCTAGGAGGTGGCTACAGCAGTTGCTTCATAATATCGGAGTCAGGGTACCAGCTCTACAAGGTGGAGGATTCGATCATATGATGGTGTCGTGA 933 0.4512 MANLPQSISMSAASFGAPSASATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQEIVSIYPVISPPNLTPAQSNRVCNALALLQCVASHLDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVRVPALQGGGFDHMMVS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01955 310 PANTHER UNCHARACTERIZED 1 308 - -
Cca05g01955 310 Gene3D - 23 293 IPR011989 -
Cca05g01955 310 PANTHER BNAA05G20110D PROTEIN 1 308 - -
Cca05g01955 310 Pfam Cell differentiation family, Rcd1-like 34 292 - -
Cca05g01955 310 SUPERFAMILY ARM repeat 37 275 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01955 Cca-Chr5 39362185 39366454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Cca05g01955 Rcd1 1.9e-128 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01955 K12606 - gmx:100801266 559.681