LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01945	ATGACAGGAGAGGCAGTGAACCCAAAAGCTTACCCTTTGGCAGATGCGCAACTCACAATAACAATTTTGGATCTTGTGCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCTAATGAAGCGACCAAGACACTCAACAGAGGCATATCTGAATTCGTTGTGATGGCCGCAGACACTGAGCCTCTTGAGATTCTTCTTCATCTCCCTCTGCTTGCTGAGGATAAGAATGTTCCCTATGTATTCGTCCCATCAAAACAAGCACTTGGTCGAGCATGTGGAGTCACACGGCCAGTGATTGCATGTTCTGTAACAACTAATGAAGGAAGTCAACTAAAATCCCAAATTCAGCAACTAAAGGATGCTATTGAGAAGCTTTTGATCTGA	387	0.4419	MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g01945	128	Gene3D	-	1	128	IPR029064	-
	Cca05g01945	128	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	4	128	-	-
	Cca05g01945	128	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	23	111	IPR004038	-
	Cca05g01945	128	PRINTS	Ribosomal protein L7A/RS6 family signature	35	49	IPR018492	-
	Cca05g01945	128	PRINTS	Ribosomal protein L7A/RS6 family signature	54	67	IPR018492	-
	Cca05g01945	128	PRINTS	Ribosomal protein L7A/RS6 family signature	70	80	IPR018492	-
	Cca05g01945	128	PRINTS	Ribosomal protein L7A/RS6 family signature	80	94	IPR018492	-
	Cca05g01945	128	PANTHER	NHP2-LIKE PROTEIN 1	4	128	-	-
	Cca05g01945	128	ProSitePatterns	Ribosomal protein L7Ae signature.	73	90	IPR004037	GO:0042254\|GO:1990904
	Cca05g01945	128	PRINTS	High mobility group-like nuclear protein signature	8	21	IPR002415	GO:0003723\|GO:0005730
	Cca05g01945	128	PRINTS	High mobility group-like nuclear protein signature	21	36	IPR002415	GO:0003723\|GO:0005730
	Cca05g01945	128	PRINTS	High mobility group-like nuclear protein signature	38	48	IPR002415	GO:0003723\|GO:0005730
	Cca05g01945	128	PRINTS	High mobility group-like nuclear protein signature	82	94	IPR002415	GO:0003723\|GO:0005730
	Cca05g01945	128	SUPERFAMILY	L30e-like	6	126	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01945	Cca-Chr5	39262113	39264568	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g01945	35	124	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	28.889	3.92e-06	42.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g01945	K12845		-	csv:101222939	239.195